Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D20
         (948 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.76 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 746 PPPPPXXPPPXPXXXPPXGGXXXXP 820
           P  P    PP P   PP GG    P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 25.0 bits (52), Expect = 1.0
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +2

Query: 695 PXXXPXXXPXXXXXXXPPPPPPXXPPPXPXXXPP 796
           P   P   P       PP P    PP  P   PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 749 PPPPXXPPPXPXXXPP 796
           PP P  PPP P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 743 PPPPPPXXPPP 775
           PP P P  PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 742 PPPPPPXXXXP 774
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 504  PXPXPPPPR 530
            P P PPPPR
Sbjct: 1857 PEPPPPPPR 1865


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 504  PXPXPPPPRXG 536
            P P PPPP  G
Sbjct: 1355 PPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,762
Number of Sequences: 438
Number of extensions: 8553
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)