Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D19
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...    43   5e-05
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    26   8.1  

>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 18/43 (41%), Positives = 29/43 (67%)
 Frame = +3

Query: 573 KRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQKEIKPKSTYP 701
           K+ECH +      LLHRAFS+F+F+++  + LQ+  + K T+P
Sbjct: 37  KKECHLMENINKGLLHRAFSMFIFDEQNRLLLQQRAEEKITFP 79



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/80 (22%), Positives = 32/80 (40%)
 Frame = +2

Query: 518 KDICLLVDEKDNFIXNGYKERMS*SRT*W*CATP*SIQCFPLQQER*YVPSEGDQAKKYI 697
           +++C++VDE D  +  G K+               +   F   ++   +  +  + K   
Sbjct: 19  EEVCIVVDENDVPLRYGTKKECHLMENINKGLLHRAFSMFIFDEQNRLLLQQRAEEKITF 78

Query: 698 SRXYTNACCSHPCT*MXXRG 757
              +TN CCSHP      RG
Sbjct: 79  PSLWTNTCCSHPLDVAGERG 98


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 692 TFWLDLLLKEHITSLVEEENTECSME*HITIRSYF 588
           +F+L + L  H+  +   EN +C+ +  I +  YF
Sbjct: 197 SFYLPVALAMHLAGVATPENLKCAQDILIILGKYF 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,249,561
Number of Sequences: 5004
Number of extensions: 64057
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)