Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D19
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0796 + 21572131-21572204,21573427-21573482,21573580-215736...    43   4e-04
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675...    40   0.003

>07_03_0796 +
           21572131-21572204,21573427-21573482,21573580-21573671,
           21574103-21574205,21574297-21574434,21574654-21574907
          Length = 238

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +3

Query: 573 KRECHKVGP-DGDVLLHRAFSVFLFNKRGDMFLQKEIKPKSTYPDXTQMLAAAIPVHR 743
           K  CH +   + + LLHRAFSVFLFN + ++ LQ+    K T+P        + P++R
Sbjct: 41  KYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYR 98


>05_04_0307 +
           20066169-20066410,20066803-20066858,20067490-20067581,
           20068400-20068502,20068623-20068760,20068898-20069148
          Length = 293

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +3

Query: 573 KRECHKVGP-DGDVLLHRAFSVFLFNKRGDMFLQKEIKPKSTYPDXTQMLAAAIPVHR 743
           K  CH +   +   +LHRAFSVFLFN + ++ LQ+    K T+P        + P++R
Sbjct: 97  KYNCHLMEKINSGHVLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYR 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,153,135
Number of Sequences: 37544
Number of extensions: 377618
Number of successful extensions: 592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)