Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_D17
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 29 1.1
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 28 2.0
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 2.0
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 2.7
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 27 3.5
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe... 27 3.5
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 3.5
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 27 4.6
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 26 6.1
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +3
Query: 483 MVKTLKVKNVKCYLGLPPGATPAGVFPSPPPRGVLVIRTPRGPDGTKGFLKR 638
MVK LK++ V+ +TPA P P P+ + R P+GP TK LKR
Sbjct: 1 MVK-LKIRAVQPPPNDSRSSTPATGPPPPIPKIKIKTREPKGPRLTKIRLKR 51
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 428 QDKLQANNLNDSQTNNKKNGENAKSKER 511
Q +NN N +Q+ N +N N++SK+R
Sbjct: 178 QPLASSNNKNHNQSKNPQNRSNSRSKQR 205
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.9 bits (59), Expect = 2.0
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = +2
Query: 263 KRPSSSGSGQLNGENRARPVKTLEQRQKEYEQARLRILGEARSPEDIIDDKLTRLQDKLQ 442
KR SG++N + LE RQK E+ R ARS E + + K+
Sbjct: 492 KRFDKEASGRINDLRAEQQQIMLEARQKAIERRRNEEEELARSRERA---RKKAEEIKIS 548
Query: 443 ANNLNDSQTNNKKNGENAKSKER 511
++ +N S T + N +S ++
Sbjct: 549 SSKMNSSPTITNERSSNVESSKK 571
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +2
Query: 263 KRPSSSGSGQLNGENRARPVKTLEQRQKEYEQARLRILGEARSPEDIIDDKLTRLQDKLQ 442
K P+ ++NGE+ + K L+ +A +SPE+I +KL + D +
Sbjct: 619 KPPTEGVDSEVNGESLVQVNKVLKSEDDNTSEASKDPSSHVKSPENI--EKLKQNDDHFE 676
Query: 443 ANNLNDSQTNNK 478
S N+K
Sbjct: 677 VTEEITSTINSK 688
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 27.1 bits (57), Expect = 3.5
Identities = 26/132 (19%), Positives = 54/132 (40%)
Frame = +2
Query: 119 LEQNIRLNSESPTENPPAISLRDCKVTVEENACIGSQCMMPEPAIRILKRPSSSGSGQLN 298
L+ N + P+IS +C+ +E + + ++ E + + ++S S
Sbjct: 36 LQSNRNAKALEKRVQDPSISEHECRRQIESKLLLYREQLLEEVSSQHSTDAAASDSNTNF 95
Query: 299 GENRARPVKTLEQRQKEYEQARLRILGEARSPEDIIDDKLTRLQDKLQANNLNDSQTNNK 478
G +P K + + E Q++ + L EA E ++ +L +LQ + N +
Sbjct: 96 GTENPKPPKAI--IKDEQSQSKTKSLDEA-DVEILVQKYREQLLKELQLQKSTEKGKNFE 152
Query: 479 KNGENAKSKERK 514
+ K KE +
Sbjct: 153 SILQPQKRKETR 164
>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 383 ARSPEDIIDDKLTRLQDKLQANNLNDSQTNNKKNGENAKSKERKVLS 523
ARSPED+I + T+ L N L S KK E + E + L+
Sbjct: 163 ARSPEDMILLRETQPLAPLDINTLGVSDNRQKKGTEKKRPFEPEFLN 209
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.1 bits (57), Expect = 3.5
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Frame = +2
Query: 203 EENACIGSQCMMPEPAIRILKRPSSSGSGQLNGENRARPVKTLEQRQKEYEQARLRILGE 382
E N+ + S C E I LK SG EN VKT E K Q + +
Sbjct: 1352 ELNSALDS-CKKREAEIHRLKEHRPSGK-----ENNIPAVKTTEPVLKNIPQRKTIFDLQ 1405
Query: 383 ARSPEDIIDDKLTRLQDKLQANNLN-DSQTNNKKNGE 490
R+ + + L R D+L N + Q N K E
Sbjct: 1406 QRNANQALYENLKRDYDRLNLEKHNLEKQVNELKGAE 1442
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 320 VKTLEQRQKEY-EQARLRILGEARSPEDIIDDKLTRLQDKLQANNLNDSQTNNKKNGENA 496
++ EQRQK+ + + RSP D+ +L K ++ D T+N N
Sbjct: 118 MQAYEQRQKQLMDDVEAKAAAVKRSPAAAFDEMRNKLVGKTNYKSIFDKSTSNSTVTSNQ 177
Query: 497 KSK 505
+K
Sbjct: 178 FNK 180
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +3
Query: 525 GLP-PGATPAGVFPSPPPR 578
G+P P TP V P+PPPR
Sbjct: 1031 GVPAPNLTPVNVPPTPPPR 1049
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,374,783
Number of Sequences: 5004
Number of extensions: 69185
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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