Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_D17
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1287 + 25510813-25510862,25511326-25511504,25511715-255120... 33 0.30
09_06_0332 + 22382508-22383214,22383576-22383631,22383673-223840... 32 0.52
05_04_0301 + 19983073-19983196,19984508-19985105,19985190-199854... 32 0.52
11_07_0003 - 27182551-27183054 30 2.8
09_02_0278 + 6691685-6692188 30 2.8
07_03_1136 + 24218601-24218734,24218769-24219906 30 2.8
03_02_0161 + 6046949-6047063,6048759-6048844,6049029-6049094,604... 29 3.7
02_01_0468 + 3357043-3357226,3357695-3358155 29 3.7
09_04_0305 - 16516481-16516638,16517135-16517274,16519196-16520148 29 4.9
07_03_1711 + 28909297-28909329,28909725-28910204,28910300-289104... 29 4.9
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217... 29 4.9
01_06_1414 + 37167849-37168820,37168909-37168980,37169104-371691... 29 6.5
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 28 8.5
>07_03_1287 + 25510813-25510862,25511326-25511504,25511715-25512037,
25512160-25513950
Length = 780
Score = 33.1 bits (72), Expect = 0.30
Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 4/144 (2%)
Frame = +2
Query: 59 PHSRTRHLSTSYIHKISTFQLEQNIRLNSESPTENPPAI-SLRDCKVTVEENACIGSQCM 235
P T LS Y + EQ L ES TE + S + + E C S+ M
Sbjct: 620 PRGVTLPLSEYYTLSKKVHEAEQ---LAHESVTEALAQVESAKASESNSLERLCEASKRM 676
Query: 236 --MPEPAIRILKRPSSSGSGQLNGENRARPVKT-LEQRQKEYEQARLRILGEARSPEDII 406
E R L+R + G+L E R + EQR+K E A+ + + SP+ I+
Sbjct: 677 NEKKEALERALERAERANQGKLTAEQELRKWRADHEQRRKAQEAAKRAVNPLSSSPKRIV 736
Query: 407 DDKLTRLQDKLQANNLNDSQTNNK 478
+ K + N+ D N K
Sbjct: 737 EQK-DSFYKEFSGNSYEDLVPNRK 759
>09_06_0332 +
22382508-22383214,22383576-22383631,22383673-22384004,
22384395-22384445
Length = 381
Score = 32.3 bits (70), Expect = 0.52
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +2
Query: 167 PAISLRDCKVTV--EENACIGSQCMMPEPAIRILKRPSSSGSGQLNGENRARPVKTLEQR 340
PA+ L D +V + +E+ I + P + SSSG+ +RA K++E+R
Sbjct: 70 PAVRLSDIQVNLPQDESNSIAKVAIKQRPQ-KHYHNNSSSGAHS----SRANLQKSVEER 124
Query: 341 QKEYEQARLRILGEARSPEDIIDDK 415
++EY +AR RI S + D +
Sbjct: 125 KEEYNKARARIFNNNSSSGNAADGR 149
>05_04_0301 +
19983073-19983196,19984508-19985105,19985190-19985442,
19985947-19985979
Length = 335
Score = 32.3 bits (70), Expect = 0.52
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +2
Query: 257 ILKRPSS--SGSGQLNGENRARPVKTLEQRQKEYEQARLRILGEARSPEDIIDDKLTRLQ 430
I RP + +G+G +N A +T+E+R +EY +AR RI + S + D
Sbjct: 137 ICPRPKAFQNGAGDAGAKNNA--ARTVEERIEEYNKARARIFNGSISDIEGTSDLGALSV 194
Query: 431 DKLQANNLNDSQTNNKKNGENAKSK 505
+ + N+ NK N N++S+
Sbjct: 195 ARDEPINVEPPVDENKVNTMNSRSR 219
>11_07_0003 - 27182551-27183054
Length = 167
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = -3
Query: 631 RKPLVPSGPRGVRITSTPR----GGGDGNTPAGV-APGG 530
R P P GVR +T R GGG G T AG +PGG
Sbjct: 71 RNPATTGSPGGVRSPATARAGSPGGGTGTTLAGAGSPGG 109
>09_02_0278 + 6691685-6692188
Length = 167
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = -3
Query: 631 RKPLVPSGPRGVRITSTPR----GGGDGNTPAGV-APGG 530
R P P GVR +T R GGG G T AG +PGG
Sbjct: 71 RNPATTGSPGGVRSPATARAGSPGGGTGTTLAGAGSPGG 109
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3
Query: 616 PSGPRGVRITSTPRGGGDGNTPAGVAPGG 530
P G RG + P GGG G P G APGG
Sbjct: 161 PGGGRGGALGRPPGGGGGGGGP-GRAPGG 188
>03_02_0161 +
6046949-6047063,6048759-6048844,6049029-6049094,
6049408-6049860,6049960-6050115,6050319-6050465,
6050570-6050641,6050730-6051293
Length = 552
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +2
Query: 305 NRARPVKT-LEQR---QKEYEQARLRILGEARSP--EDIIDDKLTRLQDKLQANNLNDSQ 466
++ PVK LE+R Q E ++ R +I +S E ++DKL R L+ + N+S
Sbjct: 325 DKLMPVKRWLEERRLLQGEIQRLRDKIAMAEKSAKAEAQLNDKLRRKLKALEDDMRNESS 384
Query: 467 TNNKKNGENAKSKE 508
+ N +NA SK+
Sbjct: 385 NTSASNKDNATSKQ 398
>02_01_0468 + 3357043-3357226,3357695-3358155
Length = 214
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 613 SGPRGVRITSTPRGGGDG-NTPAGVAPGGSP 524
S P S+P GGG G PAG AP G+P
Sbjct: 136 SPPSSSSSPSSPSGGGGGGGAPAGQAPPGAP 166
>09_04_0305 - 16516481-16516638,16517135-16517274,16519196-16520148
Length = 416
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -3
Query: 676 SWKLIITVLKYC--YLFRKPLVPSGPRGVRITSTPRGGGDGNTPAG 545
SW L TV+ YL L P PR + + GGGDG++ G
Sbjct: 241 SWYLTATVVFVVVFYLHLTKLYPEEPRYLPLVKGGGGGGDGDSDGG 286
>07_03_1711 +
28909297-28909329,28909725-28910204,28910300-28910428,
28910511-28910567,28910669-28910761,28911278-28911483,
28912757-28912898,28912981-28913170,28913263-28913369
Length = 478
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 540 ATPAGVFPSPPPRGVLVIRTPRGPD 614
A V PSPPP G + RTP PD
Sbjct: 30 AEQEAVKPSPPPPGRIRYRTPSSPD 54
>01_05_0174 +
18919759-18920265,18920381-18920443,18921060-18921761,
18922934-18923068,18923391-18923474,18924095-18924151,
18924290-18924376,18924963-18925205
Length = 625
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 86 TSYIHKISTFQLEQNIRLNSESPTENPPAISLRDCKVTVEENACIGSQCMMPEPA 250
TS+ ++ +TF+LE + L E E P L+D T + G PE A
Sbjct: 158 TSFEYEGNTFELEDPVLLTPEDSKEKPYVAILKDITETEGSLSVTGQWFYRPEEA 212
>01_06_1414 +
37167849-37168820,37168909-37168980,37169104-37169133,
37169276-37169368
Length = 388
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 522 LGLPPGATPAGVFPSPPP-RGVLVIRTPRGPDG 617
+G P G + P PPP +G +V+ +P DG
Sbjct: 232 MGYPGGYNGMAIVPPPPPAQGAMVVVSPGSSDG 264
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 586 STPRGGGDGNTPAGVAPGGSP 524
++PRGG G P G PGG P
Sbjct: 526 ASPRGGFPGGMPGGGFPGGMP 546
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,033,627
Number of Sequences: 37544
Number of extensions: 485873
Number of successful extensions: 2141
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2127
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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