Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D17
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   1.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   4.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   4.9  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   6.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.5  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 440 QANNLNDSQTNNKKNGENAKSKE 508
           Q NN ND+   +K NG N+ + +
Sbjct: 134 QENNYNDNYFYSKSNGSNSSNSD 156


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 90  AIYIKYLHFSWNRISG*TVRVPQKTRQLFL*GIARLLLKR 209
           +I +  +  +WN     T R+PQ  R++FL  +  +L+ R
Sbjct: 310 SILVTVIIINWNFRGPRTHRMPQLIRKIFLKYLPTILMMR 349


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 447 IILMTVKQIIRKMVKTLKVKNVKCYLGLPPGATPAG 554
           +++ T   ++R   +T+  K V  + G+P    P G
Sbjct: 38  LVVETTSGLVRGFPRTVLDKEVHVFYGIPFAKPPIG 73


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 446 NNLNDSQTNNKKNGEN 493
           NN N++  NN  NG N
Sbjct: 240 NNNNNNNNNNNNNGAN 255


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 447 IILMTVKQIIRKMVKTLKVKNVKCYLGLPPGATPAG 554
           +++ T   ++R   +T+  K V  + G+P    P G
Sbjct: 38  LVVETTSGLVRGFPRTVLDKEVHVFYGIPFAKPPIG 73


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 122 EQNIRLNSESPTENPPAISLRDCKVTVE 205
           E+NI  ++E    N P + LR  +VT +
Sbjct: 38  EENIEPDTELMDSNEPLLPLRHRRVTCD 65


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 282 PEDDGLFSMRIAGSGIMHCDPIHAFSSTV 196
           P D  +++  + GSG+ H + I+  S T+
Sbjct: 528 PADLVVYACNVVGSGLSHGNWIYPASMTI 556


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,215
Number of Sequences: 438
Number of extensions: 4995
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)