Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D14
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.5  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    26   6.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 610 PPPPXPXXTXKXPXXPPFFXXPPPXKKXGPP 702
           PPPP P      P   P    PP     GPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP 762



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 610 PPPPXPXXTXKXPXXPPFFXXPPPXKKXG 696
           PPPP P      P  PP    PPP    G
Sbjct: 763 PPPPPPGVAGAGPPPPP---PPPPAVSAG 788


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 276 YXETYLDLYTITLSXFLHSSTIHTLKLLSGFFYVYKQTENKFHYI 142
           Y +  L  Y I+L  F ++  + +L+++ G  YV+ +T+   H++
Sbjct: 365 YNKAVLKHY-ISLYDFENTDILQSLRMICGNLYVHGETQELDHFL 408


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 610 PPPPXPXXTXKXPXXPPFFXXPPP 681
           PPPP P    + P  PP    PPP
Sbjct: 9   PPPPPPPPGFEPPSQPP--PPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -2

Query: 701 GGPXFFXGGGXXKKGGXXGXXXVXXGXGGG 612
           GGP  F GG     GG  G      G GGG
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -2

Query: 701 GGPXFFXGGGXXKKGGXXGXXXVXXGXGGG 612
           GGP  F GG     GG  G      G GGG
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,358
Number of Sequences: 5004
Number of extensions: 40386
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)