Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_D14
(858 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 37 0.021
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 37 0.021
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 34 0.15
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 32 0.60
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.60
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.60
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.60
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 0.79
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 31 0.79
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.4
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 31 1.4
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 31 1.4
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 31 1.4
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 4.2
U40941-7|AAA81712.1| 312|Caenorhabditis elegans Hypothetical pr... 29 4.2
AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical... 29 4.2
AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical... 29 4.2
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 5.6
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 5.6
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 5.6
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 28 7.4
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 7.4
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 9.8
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 9.8
AL032655-5|CAA21723.1| 360|Caenorhabditis elegans Hypothetical ... 28 9.8
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 28 9.8
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 9.8
AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical ... 28 9.8
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 36.7 bits (81), Expect = 0.021
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = +1
Query: 610 PPPPXPXXTXKXPXXPPFFXXPPPXKKXGPP-FXXXXXAPPXGXKXXXXXXPXGKXPP 780
PPPP P P P PPP + GPP PP G + P G PP
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMR-----YPGGMPPP 350
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Frame = +1
Query: 610 PPPPXPXXTXKXPXXP-----PFFXXPPPXKKXGPPFXXXXXAPPXGXKXXXXXXPXGKX 774
P PP P T + P P P PPP + GPP PP +
Sbjct: 276 PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPP 335
Query: 775 PPXGG 789
PP G
Sbjct: 336 PPPPG 340
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +1
Query: 610 PPPPXPXXTXKXPXXPPFFXXPPPXKKXGPPFXXXXXAPP 729
PPPP P P P PPP + PP PP
Sbjct: 348 PPPPPPRYPSAGPGMYP---PPPPSRPPAPPSGHGMIPPP 384
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 36.7 bits (81), Expect = 0.021
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = +1
Query: 610 PPPPXPXXTXKXPXXPPFFXXPPPXKKXGPP-FXXXXXAPPXGXKXXXXXXPXGKXPP 780
PPPP P P P PPP + GPP PP G + P G PP
Sbjct: 308 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMR-----YPGGMPPP 360
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Frame = +1
Query: 610 PPPPXPXXTXKXPXXP-----PFFXXPPPXKKXGPPFXXXXXAPPXGXKXXXXXXPXGKX 774
P PP P T + P P P PPP + GPP PP +
Sbjct: 286 PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPP 345
Query: 775 PPXGG 789
PP G
Sbjct: 346 PPPPG 350
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +1
Query: 610 PPPPXPXXTXKXPXXPPFFXXPPPXKKXGPPFXXXXXAPP 729
PPPP P P P PPP + PP PP
Sbjct: 358 PPPPPPRYPSAGPGMYP---PPPPSRPPAPPSGHGMIPPP 394
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/62 (33%), Positives = 21/62 (33%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKXPXXPPFFXXPPPXKKXGPPFXXXXXAPPXGXKXXXXXXPXGKX 774
P PPPP T K P P PPP K PP PP K P K
Sbjct: 170 PTTEAPPPP----TTKAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKP 225
Query: 775 PP 780
P
Sbjct: 226 AP 227
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 31.9 bits (69), Expect = 0.60
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 610 PPPPXPXXTXKXPXXPPFFXXPPPXKKXGPP 702
PPPP P T K P PP P K P
Sbjct: 86 PPPPPPPPTLKAPPPPPILGLKTPSKSLKTP 116
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 610 PPPPXPXXTXKXPXXPPFFXXPPPXKKXGPP 702
PPPP P + PP PPP K PP
Sbjct: 70 PPPPPPLISILQQAPPPPPPPPPPTLKAPPP 100
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKX-----PXXPPFFXXPPPXKKXGPPFXXXXXAPPXGXKXXXXXX 759
P PPPP P + P PP PPP + PP PP
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Query: 760 PXGKXPP 780
G PP
Sbjct: 293 RAGSPPP 299
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/64 (31%), Positives = 21/64 (32%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKXPXXPPFFXXPPPXKKXGPPFXXXXXAPPXGXKXXXXXXPXGKX 774
P PPP P T P P PPP PP +PP G G
Sbjct: 266 PPRTGSPPPPP--TGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG--SLPPPQAGGSP 321
Query: 775 PPXG 786
PP G
Sbjct: 322 PPAG 325
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +1
Query: 289 SDXPPEXGXPPPAMXXLVPXXXPTGGXXXPQXXNXSLPXGXSPP 420
S PP G PPP P G P S P G PP
Sbjct: 271 SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 314
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKX-----PXXPPFFXXPPPXKKXGPPFXXXXXAPPXGXKXXXXXX 759
P PPPP P + P PP PPP + PP PP
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Query: 760 PXGKXPP 780
G PP
Sbjct: 314 RAGSPPP 320
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/64 (31%), Positives = 21/64 (32%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKXPXXPPFFXXPPPXKKXGPPFXXXXXAPPXGXKXXXXXXPXGKX 774
P PPP P T P P PPP PP +PP G G
Sbjct: 287 PPRTGSPPPPP--TGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG--SLPPPQAGGSP 342
Query: 775 PPXG 786
PP G
Sbjct: 343 PPAG 346
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +1
Query: 289 SDXPPEXGXPPPAMXXLVPXXXPTGGXXXPQXXNXSLPXGXSPP 420
S PP G PPP P G P S P G PP
Sbjct: 292 SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 335
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKX-----PXXPPFFXXPPPXKKXGPPFXXXXXAPPXGXKXXXXXX 759
P PPPP P + P PP PPP + PP PP
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Query: 760 PXGKXPP 780
G PP
Sbjct: 299 RAGSPPP 305
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/64 (31%), Positives = 21/64 (32%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKXPXXPPFFXXPPPXKKXGPPFXXXXXAPPXGXKXXXXXXPXGKX 774
P PPP P T P P PPP PP +PP G G
Sbjct: 272 PPRTGSPPPPP--TGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG--SLPPPQAGGSP 327
Query: 775 PPXG 786
PP G
Sbjct: 328 PPAG 331
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +1
Query: 289 SDXPPEXGXPPPAMXXLVPXXXPTGGXXXPQXXNXSLPXGXSPP 420
S PP G PPP P G P S P G PP
Sbjct: 277 SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 320
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.5 bits (68), Expect = 0.79
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Frame = +1
Query: 595 PXXXXPPP---PXPXXTXKXPXXPPFFXXPPPXKKXGPPFXXXXXAPP 729
P PPP P P P PP F PPP PP PP
Sbjct: 29 PCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPP 76
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 31.5 bits (68), Expect = 0.79
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKXPXXPPFFXXPPPXKKXGPP 702
P PPPP P P PP PPP GPP
Sbjct: 559 PIPPPPPPPLPQNLSGAPPPPP----PPPPMLGGPP 590
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/60 (35%), Positives = 21/60 (35%)
Frame = +1
Query: 610 PPPPXPXXTXKXPXXPPFFXXPPPXKKXGPPFXXXXXAPPXGXKXXXXXXPXGKXPPXGG 789
PPP P T P PP PP GPP PP G P PP GG
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPP--ITGGPP-----PPPPPGGLPPISGGPPPPPPPPGG 767
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKXPXXPPFFXXPPPXKKXG--PPFXXXXXAPPXGXKXXXXXXPXG 768
P PPPP P PP PPP G PP PP P
Sbjct: 721 PITGGPPPPPPPG-----GLPPITGGPPPPPPPGGLPPI---SGGPPPPPPPPGGCPPPP 772
Query: 769 KXPPXGG 789
PP GG
Sbjct: 773 PPPPPGG 779
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/60 (35%), Positives = 21/60 (35%)
Frame = +1
Query: 610 PPPPXPXXTXKXPXXPPFFXXPPPXKKXGPPFXXXXXAPPXGXKXXXXXXPXGKXPPXGG 789
PPP P T P PP PP GPP PP G P PP GG
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPP--ITGGPP-----PPPPPGGLPPISGGPPPPPPPPGG 767
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKXPXXPPFFXXPPPXKKXG--PPFXXXXXAPPXGXKXXXXXXPXG 768
P PPPP P PP PPP G PP PP P
Sbjct: 721 PITGGPPPPPPPG-----GLPPITGGPPPPPPPGGLPPI---SGGPPPPPPPPGGCPPPP 772
Query: 769 KXPPXGG 789
PP GG
Sbjct: 773 PPPPPGG 779
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/60 (35%), Positives = 21/60 (35%)
Frame = +1
Query: 610 PPPPXPXXTXKXPXXPPFFXXPPPXKKXGPPFXXXXXAPPXGXKXXXXXXPXGKXPPXGG 789
PPP P T P PP PP GPP PP G P PP GG
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPP--ITGGPP-----PPPPPGGLPPISGGPPPPPPPPGG 350
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKXPXXPPFFXXPPPXKKXG--PPFXXXXXAPPXGXKXXXXXXPXG 768
P PPPP P PP PPP G PP PP P
Sbjct: 304 PITGGPPPPPPPG-----GLPPITGGPPPPPPPGGLPPI---SGGPPPPPPPPGGCPPPP 355
Query: 769 KXPPXGG 789
PP GG
Sbjct: 356 PPPPPGG 362
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +1
Query: 580 GXFXXPXXXXPPPPXPXXTXKXPXXPPFFXXPPPXKKXGPP 702
G F P PPP P + PP F PPP GPP
Sbjct: 294 GFFPPPPRGHFPPPPPHFMGRG--MPPPFMPPPPHFGMGPP 332
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKXPXXPPFFXXPPP 681
P PPP P P PPFF PPP
Sbjct: 331 PPRGFMPPPHPMMFRGGPY-PPFFPPPPP 358
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +1
Query: 580 GXFXXPXXXXPPPPXPXXTXKXPXXPPFFXXPPPXKKXGPP 702
G F P PPP P + PP F PPP GPP
Sbjct: 294 GFFPPPPRGHFPPPPPHFMGRG--MPPPFMPPPPHFGMGPP 332
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKXPXXPPFFXXPPP 681
P PPP P P PPFF PPP
Sbjct: 331 PPRGFMPPPHPMMFRGGPY-PPFFPPPPP 358
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/62 (29%), Positives = 21/62 (33%)
Frame = -2
Query: 779 GGXFPXGXXXXXXFXPXGGAXXXXKXGGPXFFXGGGXXKKGGXXGXXXVXXGXGGGGXXX 600
GG + G + GG GGP + GG GG G G G GG
Sbjct: 116 GGGYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGY 175
Query: 599 XG 594
G
Sbjct: 176 GG 177
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
protein T23F1.5 protein.
Length = 1262
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/62 (29%), Positives = 19/62 (30%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKXPXXPPFFXXPPPXKKXGPPFXXXXXAPPXGXKXXXXXXPXGKX 774
P PPPP P P P P K+ PPF PP P
Sbjct: 546 PYIPPPPPPHPEEEYATPYTVP------PGKQPFPPFGEGPATPPRSLIPAHNFPPPSTF 599
Query: 775 PP 780
PP
Sbjct: 600 PP 601
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/49 (38%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKXPXXPPFF--XXPPPXKKXG--PPFXXXXXAPP 729
P PPPP P P PP F PPP G PP APP
Sbjct: 70 PNGFIPPPPGPGG---IPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPP 115
>U40941-7|AAA81712.1| 312|Caenorhabditis elegans Hypothetical
protein F35C8.8 protein.
Length = 312
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = -1
Query: 366 PPGGGPXGDQXXHGXGGXTXFGGXVRIHFYYXETYLDLYTITLS----XFLHSSTIHTLK 199
PP G P G Q GG G + ++ T L L+T++LS F+ S + K
Sbjct: 119 PPHGQPEGVQLASFFGGGGKIEGVIVFMYFSSSTLLLLHTLSLSFSWCHFIISGSCG--K 176
Query: 198 LLSGFFYVYK 169
L FF++ K
Sbjct: 177 LTFDFFFLLK 186
>AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical
protein Y116A8C.16c protein.
Length = 982
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 288 IHFYYXETYLDLYTITLSXFLHSSTIHTLKLLSGFFYVYKQTEN 157
+ F++ + Y + S F+H+ IH L +YV K EN
Sbjct: 696 VPFFFGDNPNQFYRLFTSLFVHAGVIHLALSLLFQYYVMKDLEN 739
>AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical
protein Y116A8C.16a protein.
Length = 727
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 288 IHFYYXETYLDLYTITLSXFLHSSTIHTLKLLSGFFYVYKQTEN 157
+ F++ + Y + S F+H+ IH L +YV K EN
Sbjct: 441 VPFFFGDNPNQFYRLFTSLFVHAGVIHLALSLLFQYYVMKDLEN 484
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Frame = +1
Query: 610 PPPPXPXXTXKXPXXPPFFXXPPPXKKXGPPFXXXXXAPP-XGXKXXXXXXPXGKXPPXG 786
PPPP P P PP PPP P PP G P PP
Sbjct: 489 PPPPMPSINGHAPNPPP----PPPLLGIAPMSTNAPPPPPMPGMAPLSTGAPTPPPPPPV 544
Query: 787 G 789
G
Sbjct: 545 G 545
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/65 (24%), Positives = 18/65 (27%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKXPXXPPFFXXPPPXKKXGPPFXXXXXAPPXGXKXXXXXXPXGKX 774
P PPP + P P + PPP P P G P
Sbjct: 386 PPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYG 445
Query: 775 PPXGG 789
PP G
Sbjct: 446 PPPTG 450
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +1
Query: 610 PPPPXPXXTXKXPXXPPFFXXPPPXKKXGPPFXXXXXAPP 729
PPPP P K P P PPP P PP
Sbjct: 1357 PPPPPPPTMSKAPTGVP-LPVPPPPPLFSPSMILPPPPPP 1395
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = +2
Query: 299 PPNXVFPPXPWXXWSPXGPP-PGGXXFPKXXTXHXXXXXPPXGP 427
PP PP P P GPP P G P + PP GP
Sbjct: 142 PPGPAGPPGPQGNKGPLGPPGPPGPEGPNGTAGNKGPAGPP-GP 184
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 595 PXXXXPPPPXPXXTXKXPXXPPFFXXPPP 681
P PPPP P P PP + PPP
Sbjct: 127 PYQQQPPPPPPPP--HYPPPPPHYPPPPP 153
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/65 (30%), Positives = 20/65 (30%)
Frame = -2
Query: 788 PPXGGXFPXGXXXXXXFXPXGGAXXXXKXGGPXFFXGGGXXKKGGXXGXXXVXXGXGGGG 609
P GG G GG GG GGG GG G G GGGG
Sbjct: 78 PCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGG 137
Query: 608 XXXXG 594
G
Sbjct: 138 GCGGG 142
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/65 (30%), Positives = 20/65 (30%)
Frame = -2
Query: 788 PPXGGXFPXGXXXXXXFXPXGGAXXXXKXGGPXFFXGGGXXKKGGXXGXXXVXXGXGGGG 609
P GG G GG GG GGG GG G G GGGG
Sbjct: 78 PCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGG 137
Query: 608 XXXXG 594
G
Sbjct: 138 GCGGG 142
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -2
Query: 728 GGAXXXXKXGGPXFFXGGGXXKKGGXXGXXXVXXGXGGGG 609
GG + GGP + G G +GG G G GGG
Sbjct: 227 GGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGG 266
>AL032655-5|CAA21723.1| 360|Caenorhabditis elegans Hypothetical
protein Y6B3B.10 protein.
Length = 360
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -1
Query: 267 TYLDLYTI--TLSXFLHSSTIHTLKLLSGFFYVYKQTENKFH 148
+Y+D +T+ L FLH ++ TL++ FY+ K+T +++
Sbjct: 201 SYVDNFTLPGALVLFLHDNSDATLEITKLSFYLKKRTNRQYY 242
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -2
Query: 728 GGAXXXXKXGGPXFFXGGGXXKKGGXXGXXXVXXGXGGGG 609
GG + GGP + G G +GG G G GGG
Sbjct: 189 GGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGG 228
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -2
Query: 728 GGAXXXXKXGGPXFFXGGGXXKKGGXXGXXXVXXGXGGGG 609
GG + GGP + G G +GG G G GGG
Sbjct: 227 GGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGG 266
>AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical
protein Y49C4A.8a protein.
Length = 536
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 279 YYXETYLDLYTITLSXFLHSSTIHTLKLLSGFFYVYKQTENKF 151
Y+ +T+LD+YT+ ++ STI ++ +VYK T F
Sbjct: 490 YFQKTFLDIYTLFALFYIFVSTI----IIVTIRFVYKFTRKHF 528
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,815,713
Number of Sequences: 27780
Number of extensions: 350675
Number of successful extensions: 1722
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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