Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_D13
(919 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 35 0.071
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 35 0.071
Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical pr... 28 0.080
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 34 0.12
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 33 0.29
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 0.87
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 31 0.87
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 31 0.87
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.2
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 31 1.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.2
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 2.7
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 29 3.5
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 6.2
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 6.2
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 29 6.2
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 29 6.2
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 29 6.2
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 28 8.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 8.1
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 28 8.1
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 35.1 bits (77), Expect = 0.071
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = +3
Query: 777 PPPPXEXGXFFXWXPPXXPPPXXTXXPRXXXXXXXXXPPSPXG 905
PPPP G W PP PPP T P PPS G
Sbjct: 287 PPPPPSSGM---WPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG 326
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/44 (29%), Positives = 16/44 (36%)
Frame = +3
Query: 777 PPPPXEXGXFFXWXPPXXPPPXXTXXPRXXXXXXXXXPPSPXGG 908
PPPP + PP PP + P PP+P G
Sbjct: 334 PPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSG 377
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 35.1 bits (77), Expect = 0.071
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = +3
Query: 777 PPPPXEXGXFFXWXPPXXPPPXXTXXPRXXXXXXXXXPPSPXG 905
PPPP G W PP PPP T P PPS G
Sbjct: 297 PPPPPSSGM---WPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG 336
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/44 (29%), Positives = 16/44 (36%)
Frame = +3
Query: 777 PPPPXEXGXFFXWXPPXXPPPXXTXXPRXXXXXXXXXPPSPXGG 908
PPPP + PP PP + P PP+P G
Sbjct: 344 PPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSG 387
>Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical
protein B0285.1 protein.
Length = 730
Score = 27.9 bits (59), Expect(2) = 0.080
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +3
Query: 774 PPPPPXEXGXFFXWXPPXXPPPXXTXXP 857
PPPPP F PP PP + P
Sbjct: 206 PPPPPLPPNSQFMTPPPRPPPAPFSIPP 233
Score = 25.8 bits (54), Expect(2) = 0.080
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 591 PPPPXFGEKNXFFXKXXXPPPXXXPP 668
PPPP F N F PPP PP
Sbjct: 189 PPPPSFNI-NPFQPMFSQPPPPPLPP 213
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 34.3 bits (75), Expect = 0.12
Identities = 34/121 (28%), Positives = 38/121 (31%), Gaps = 5/121 (4%)
Frame = +1
Query: 322 GFFXXXXPKXFFXXPPXXXGGXPXPXXKXGFFXNFXXXPXXXX--FFXPPXXFFFFFXPP 495
G F P+ F P GG P P NF P F PP F P
Sbjct: 346 GSFGAPPPQQFHAPSPQSFGGPPPPVSSAP--GNFAPPPQSGPPGAFAPPPSAF---GAP 400
Query: 496 EXNXXPXXXXVXPXGGXXXP---PPXKKXLXGXGXPPPXISGKKXFFXXKXGAPPPFXXP 666
+ P P GG P P + G G PPP G + G PP P
Sbjct: 401 QGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPP--GGPGAYGPPPTGFPPVGAPP 458
Query: 667 P 669
P
Sbjct: 459 P 459
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Frame = +3
Query: 504 PXSXPXXGXPXXGGFXXPPXKK----XSXXXXXPPPPXFGEKNXFFXKXXXPPPXXXPP 668
P P G P G F PP ++ PPPP F PPP PP
Sbjct: 334 PPQGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGNF-----APPPQSGPP 387
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 761 PXKXPPPPPXGXGXFFXLXPPPXXXPXXNXXPP 859
P PPPP G G + PPP P PP
Sbjct: 430 PGGFGPPPPGGPGAY---GPPPTGFPPVGAPPP 459
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 33.1 bits (72), Expect = 0.29
Identities = 22/67 (32%), Positives = 23/67 (34%)
Frame = +1
Query: 481 FFXPPEXNXXPXXXXVXPXGGXXXPPPXKKXLXGXGXPPPXISGKKXFFXXKXGAPPPFX 660
FF PP P P G PPP G PPP + G PP F
Sbjct: 63 FFIPPPV---PNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPP-------PPPMFG 112
Query: 661 XPPXXPP 681
PP PP
Sbjct: 113 APPPPPP 119
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.5 bits (68), Expect = 0.87
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 899 GGGGXXXPPPXXXAGXXGXXGGXXXGG 819
GGGG PPP G G GG GG
Sbjct: 43 GGGGGCAPPPAPCGGGCGGGGGGCGGG 69
Score = 31.5 bits (68), Expect = 0.87
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 899 GGGGXXXPPPXXXAGXXGXXGGXXXGG 819
GGGG PPP G G GG GG
Sbjct: 67 GGGGGCAPPPAPCGGGCGGGGGGCGGG 93
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -3
Query: 899 GGGGXXXPPPXXXAGXXGXXGGXXXGGXPXKKXAP 795
GGGG PP G G GG GG AP
Sbjct: 44 GGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAP 78
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 899 GGGGXXXPPPXXXAGXXGXXGGXXXGG 819
GGGG PP G G GG GG
Sbjct: 68 GGGGCAPPPAPCGGGCGGGGGGCGGGG 94
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.5 bits (68), Expect = 0.87
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 899 GGGGXXXPPPXXXAGXXGXXGGXXXGG 819
GGGG PPP G G GG GG
Sbjct: 43 GGGGGCAPPPAPCGGGCGGGGGGCGGG 69
Score = 31.5 bits (68), Expect = 0.87
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 899 GGGGXXXPPPXXXAGXXGXXGGXXXGG 819
GGGG PPP G G GG GG
Sbjct: 67 GGGGGCAPPPAPCGGGCGGGGGGCGGG 93
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -3
Query: 899 GGGGXXXPPPXXXAGXXGXXGGXXXGGXPXKKXAP 795
GGGG PP G G GG GG AP
Sbjct: 44 GGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAP 78
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 899 GGGGXXXPPPXXXAGXXGXXGGXXXGG 819
GGGG PP G G GG GG
Sbjct: 68 GGGGCAPPPAPCGGGCGGGGGGCGGGG 94
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 31.5 bits (68), Expect = 0.87
Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Frame = +3
Query: 774 PPPPPXEXGX--FFXWXPPXXPPPXXTXXPRXXXXXXXXXPPSPXGG 908
PPPPP G PP PPP P PP P G
Sbjct: 613 PPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSG 659
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +1
Query: 820 PPXXXPPXKPXXPAXXXGGGXXXPPPPXGG 909
PP PP PA G PPPP G
Sbjct: 630 PPPPPPPPPMGLPAVGAGAPPPPPPPPPSG 659
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 31.5 bits (68), Expect = 0.87
Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Frame = +3
Query: 774 PPPPPXEXGX--FFXWXPPXXPPPXXTXXPRXXXXXXXXXPPSPXGG 908
PPPPP G PP PPP P PP P G
Sbjct: 439 PPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSG 485
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +1
Query: 820 PPXXXPPXKPXXPAXXXGGGXXXPPPPXGG 909
PP PP PA G PPPP G
Sbjct: 456 PPPPPPPPPMGLPAVGAGAPPPPPPPPPSG 485
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.2
Identities = 29/116 (25%), Positives = 30/116 (25%)
Frame = +1
Query: 553 PPPXKKXLXGXGXPPPXISGKKXFFXXKXGAPPPFXXPPXXPPXXXXXXXXXXXXXXXXX 732
PPP K L P +G G PPP PP PP
Sbjct: 686 PPPTKMNLSA----PSTSAGGSSALPPITGGPPP---PPGLPPITGGPPPPPPPGGLPPI 738
Query: 733 XXXXXXXXPPXKXXXXXXXXXXAFFXFGXPPXXXPPXKPXXPAXXXGGGXXXPPPP 900
PP PP PP P P GG PPPP
Sbjct: 739 TGGPPPPPPPGGLPPISGGPPPP----PPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +1
Query: 532 PXGGXXXPPPXKKXLXGXGXPPPXISGKKXFFXXKXGAPPPFXXPP 669
P G PPP + G PPP G PPP PP
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPP 753
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Frame = +1
Query: 490 PPEXNXXPXXXXVXPXGGXXXPPPXKKXLX---GXGXPPPXISGKKXFFXXKXGAPPPFX 660
PP P + P G PPP L G PPP G PPP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 661 XPPXXPP 681
P PP
Sbjct: 767 GCPPPPP 773
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/65 (27%), Positives = 18/65 (27%)
Frame = +2
Query: 644 PPPXXXPPXXXPXXXFSPPXXXXXXXXXXXXXXXXXFXXPXKXPPPPPXGXGXFFXLXPP 823
PPP P P PP P PPPPP F PP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Query: 824 PXXXP 838
P P
Sbjct: 786 PPPPP 790
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = +1
Query: 814 GXPPXXXPPXKPXXPAXXX--GGGXXXPPPPXGG 909
G PP P P P GG PPPP GG
Sbjct: 734 GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/62 (30%), Positives = 19/62 (30%)
Frame = +3
Query: 495 GXKPXSXPXXGXPXXGGFXXPPXKKXSXXXXXPPPPXFGEKNXFFXKXXXPPPXXXPPXX 674
G P P G P G PP PPPP G PPP P
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG------GFKGGPPPPPPPGMF 793
Query: 675 AP 680
AP
Sbjct: 794 AP 795
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 774 PPPPPXEXGXFFXWXPPXXPP 836
PPPPP G F PP PP
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPP 790
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 773 PPPPPXGXGXFFXLXPPPXXXPXXNXXPP 859
PPPPP G PPP P PP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.2
Identities = 29/116 (25%), Positives = 30/116 (25%)
Frame = +1
Query: 553 PPPXKKXLXGXGXPPPXISGKKXFFXXKXGAPPPFXXPPXXPPXXXXXXXXXXXXXXXXX 732
PPP K L P +G G PPP PP PP
Sbjct: 686 PPPTKMNLSA----PSTSAGGSSALPPITGGPPP---PPGLPPITGGPPPPPPPGGLPPI 738
Query: 733 XXXXXXXXPPXKXXXXXXXXXXAFFXFGXPPXXXPPXKPXXPAXXXGGGXXXPPPP 900
PP PP PP P P GG PPPP
Sbjct: 739 TGGPPPPPPPGGLPPISGGPPPP----PPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +1
Query: 532 PXGGXXXPPPXKKXLXGXGXPPPXISGKKXFFXXKXGAPPPFXXPP 669
P G PPP + G PPP G PPP PP
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPP 753
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Frame = +1
Query: 490 PPEXNXXPXXXXVXPXGGXXXPPPXKKXLX---GXGXPPPXISGKKXFFXXKXGAPPPFX 660
PP P + P G PPP L G PPP G PPP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 661 XPPXXPP 681
P PP
Sbjct: 767 GCPPPPP 773
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/65 (27%), Positives = 18/65 (27%)
Frame = +2
Query: 644 PPPXXXPPXXXPXXXFSPPXXXXXXXXXXXXXXXXXFXXPXKXPPPPPXGXGXFFXLXPP 823
PPP P P PP P PPPPP F PP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Query: 824 PXXXP 838
P P
Sbjct: 786 PPPPP 790
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = +1
Query: 814 GXPPXXXPPXKPXXPAXXX--GGGXXXPPPPXGG 909
G PP P P P GG PPPP GG
Sbjct: 734 GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/62 (30%), Positives = 19/62 (30%)
Frame = +3
Query: 495 GXKPXSXPXXGXPXXGGFXXPPXKKXSXXXXXPPPPXFGEKNXFFXKXXXPPPXXXPPXX 674
G P P G P G PP PPPP G PPP P
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG------GFKGGPPPPPPPGMF 793
Query: 675 AP 680
AP
Sbjct: 794 AP 795
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 774 PPPPPXEXGXFFXWXPPXXPP 836
PPPPP G F PP PP
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPP 790
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 773 PPPPPXGXGXFFXLXPPPXXXPXXNXXPP 859
PPPPP G PPP P PP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.2
Identities = 29/116 (25%), Positives = 30/116 (25%)
Frame = +1
Query: 553 PPPXKKXLXGXGXPPPXISGKKXFFXXKXGAPPPFXXPPXXPPXXXXXXXXXXXXXXXXX 732
PPP K L P +G G PPP PP PP
Sbjct: 269 PPPTKMNLSA----PSTSAGGSSALPPITGGPPP---PPGLPPITGGPPPPPPPGGLPPI 321
Query: 733 XXXXXXXXPPXKXXXXXXXXXXAFFXFGXPPXXXPPXKPXXPAXXXGGGXXXPPPP 900
PP PP PP P P GG PPPP
Sbjct: 322 TGGPPPPPPPGGLPPISGGPPPP----PPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +1
Query: 532 PXGGXXXPPPXKKXLXGXGXPPPXISGKKXFFXXKXGAPPPFXXPP 669
P G PPP + G PPP G PPP PP
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPP 336
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Frame = +1
Query: 490 PPEXNXXPXXXXVXPXGGXXXPPPXKKXLX---GXGXPPPXISGKKXFFXXKXGAPPPFX 660
PP P + P G PPP L G PPP G PPP
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349
Query: 661 XPPXXPP 681
P PP
Sbjct: 350 GCPPPPP 356
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/65 (27%), Positives = 18/65 (27%)
Frame = +2
Query: 644 PPPXXXPPXXXPXXXFSPPXXXXXXXXXXXXXXXXXFXXPXKXPPPPPXGXGXFFXLXPP 823
PPP P P PP P PPPPP F PP
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
Query: 824 PXXXP 838
P P
Sbjct: 369 PPPPP 373
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = +1
Query: 814 GXPPXXXPPXKPXXPAXXX--GGGXXXPPPPXGG 909
G PP P P P GG PPPP GG
Sbjct: 317 GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 350
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/62 (30%), Positives = 19/62 (30%)
Frame = +3
Query: 495 GXKPXSXPXXGXPXXGGFXXPPXKKXSXXXXXPPPPXFGEKNXFFXKXXXPPPXXXPPXX 674
G P P G P G PP PPPP G PPP P
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG------GFKGGPPPPPPPGMF 376
Query: 675 AP 680
AP
Sbjct: 377 AP 378
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 774 PPPPPXEXGXFFXWXPPXXPP 836
PPPPP G F PP PP
Sbjct: 353 PPPPPPPPGGFKGGPPPPPPP 373
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 773 PPPPPXGXGXFFXLXPPPXXXPXXNXXPP 859
PPPPP G PPP P PP
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 814 GXPPXXXPPXKPXXPAXXXGGGXXXPPPPXG 906
G PP P KP P G PPPP G
Sbjct: 731 GIPPMGFDPNKPPPPMFQQGFNAGAPPPPFG 761
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Frame = +1
Query: 532 PXGGXXXPPPXK--KXLXGXGXPPPXISGKKXFFXXKXGAPPPFXXPPXXPP 681
P G PPP K L G G PPP + PPP P PP
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 284
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Frame = +1
Query: 532 PXGGXXXPPPXK--KXLXGXGXPPPXISGKKXFFXXKXGAPPPFXXPPXXPP 681
P G PPP K L G G PPP + PPP P PP
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 305
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Frame = +1
Query: 532 PXGGXXXPPPXK--KXLXGXGXPPPXISGKKXFFXXKXGAPPPFXXPPXXPP 681
P G PPP K L G G PPP + PPP P PP
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 290
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +3
Query: 774 PPPPPXEXGXFFXWXPPXXPPPXXTXXPRXXXXXXXXXPP 893
PPPPP PP PPP + P PP
Sbjct: 1342 PPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPP 1381
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.5 bits (63), Expect = 3.5
Identities = 29/107 (27%), Positives = 29/107 (27%)
Frame = -2
Query: 909 PPXGGRGXPXPXXXXXXGGXXFXWGXXXGGGXKXKKXPXPXGGGGGXFXGXXXXXXXXXX 730
P GG G GG G GGG P GGG G G
Sbjct: 21 PSGGGGGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPPACGGGCGG-GGGGCGGGGGGC 79
Query: 729 XXXXXXXGXXGGEKXXXGXXXGGXKXGGGXXFXXKKXFFPRNXGGGG 589
G GG G GG GGG GGGG
Sbjct: 80 GGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGG 126
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 516 PXXGXPXXGGFXXPPXKKXSXXXXXPPPPXFG 611
P G P GGF PP PPPP G
Sbjct: 37 PACGNPCGGGFGPPPPPFGPVGYALPPPPPNG 68
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +1
Query: 490 PPEXNXXPXXXXVXPXGGXXXPPPXKKXLXGXGXPPPXISG 612
PP P P GG PPP G PPP +G
Sbjct: 28 PPPQCCGPPPACGNPCGGGFGPPPPPFGPVGYALPPPPPNG 68
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 773 PPPPPXGXGXFFXLXPPPXXXP 838
P PPP G G F PPP P
Sbjct: 662 PVPPPGGLGGFMPPPPPPPPMP 683
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 773 PPPPPXGXGXFFXLXPPPXXXP 838
P PPP G G F PPP P
Sbjct: 662 PVPPPGGLGGFMPPPPPPPPMP 683
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Frame = +1
Query: 553 PPPXKKXLXGXGXPPPXIS-GKKXFFXXKXGA---PPPFXXPPXXPP 681
PPP G PPP I G + + PPPF PP PP
Sbjct: 94 PPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPP 140
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Frame = +1
Query: 553 PPPXKKXLXGXGXPPPXIS-GKKXFFXXKXGA---PPPFXXPPXXPP 681
PPP G PPP I G + + PPPF PP PP
Sbjct: 117 PPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPP 163
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Frame = +1
Query: 553 PPPXKKXLXGXGXPPPXIS-GKKXFFXXKXGA---PPPFXXPPXXPP 681
PPP G PPP I G + + PPPF PP PP
Sbjct: 367 PPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPP 413
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = -3
Query: 680 GGXXGGXXXGGGAPXFXKKXIFFPEXXGGGXPXPXRXF 567
GG GG GG+ F + P GG P P F
Sbjct: 128 GGGGGGGYASGGSGGFASAPVSLPAPSYGGPPPPAPSF 165
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 774 PPPPPXEXGXFFXWXPPXXPPPXXTXXP 857
PPPPP G + PP PPP P
Sbjct: 40 PPPPPPPCGGGYE-APPPPPPPSYAGGP 66
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 835 PPXKPXXPAXXXGGGXXXPPPPXGG 909
PP P P G PPPP GG
Sbjct: 794 PPPPPPLPPISSGAPPPPPPPPPGG 818
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 835 PPXKPXXPAXXXGGGXXXPPPPXGG 909
PP P P G PPPP GG
Sbjct: 794 PPPPPPLPPISSGAPPPPPPPPPGG 818
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Frame = +3
Query: 774 PPPPPXEXGXFFXWXPPXXPPP--XXTXXPR-XXXXXXXXXPPSP 899
PPPPP PP PPP T PR PPSP
Sbjct: 123 PPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSP 167
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -3
Query: 899 GGGGXXXPPPXXXAGXXGXXGGXXXGGXPXKKXAPL 792
GGGG PPP G G GG AP+
Sbjct: 24 GGGGCCAPPPPPPCGGGCGGGAPAAGGYAVAPQAPI 59
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,281,078
Number of Sequences: 27780
Number of extensions: 231077
Number of successful extensions: 1669
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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