Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_D12
(925 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.23
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.70
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.1
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 27 3.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.7
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.9
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ... 27 4.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.23
Identities = 27/92 (29%), Positives = 28/92 (30%)
Frame = +2
Query: 533 PPXGXGXWFLGPXPXPPPXXPXPRXXGXGXXFPPPXXGXXGXPPNPGXTPEKTFXPRAPQ 712
PP G G P PPP PR G P P G PP P + T P
Sbjct: 325 PPIGNGSSNSSLPPPPPP----PRSNAAG-SIPLPPQGRSAPPPPPPRSAPSTGRQPPPL 379
Query: 713 RPXNPKKGPXWXXXFPXGPPPXXGXSKKXXPP 808
P P PP G S PP
Sbjct: 380 SSSRAVSNP------PAPPPAIPGRSAPALPP 405
Score = 27.5 bits (58), Expect = 2.8
Identities = 27/97 (27%), Positives = 27/97 (27%), Gaps = 5/97 (5%)
Frame = +2
Query: 443 KXXXPPPXXSFXFPGXGGGXGGFXXXKXPXPPXGXGXWFLGPXPXPP-----PXXPXPRX 607
K PPP S G G P PP G P PP P P PR
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Query: 608 XGXGXXFPPPXXGXXGXPPNPGXTPEKTFXPRAPQRP 718
PPP NP P AP P
Sbjct: 369 APSTGRQPPPLSSSRAV-SNPPAPPPAIPGRSAPALP 404
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Frame = +3
Query: 768 PPPXXGXQKXSXPXXGXGXNPXRGXLXXPX-------AXPPVXTPPRXPXPXSPP 911
PPP + S P P R P + PPV TPP P P +PP
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP-PSAPP 429
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +3
Query: 765 APPPXX-GXQKXSXPXXGXGXNPXRGXLXXPXAXPPVXTPPRXPXPXSPP 911
APPP G + P G + P + PP PP P P +PP
Sbjct: 390 APPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP-SAPPSLP-PSAPP 437
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.70
Identities = 24/76 (31%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
Frame = +2
Query: 521 KXPXPPXGXGXWFLGPXPXPPP-XXPXPRXXGXGXXFPPPXXGXXGXPPNPGXTPE---- 685
K P PP P P P P P P G PPP G PP P P
Sbjct: 730 KSPPPPP-PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Query: 686 -KTFXPRAPQRPXNPK 730
+ APQ PK
Sbjct: 789 GSRYYAPAPQAEPEPK 804
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/58 (25%), Positives = 19/58 (32%)
Frame = +2
Query: 566 PXPXPPPXXPXPRXXGXGXXFPPPXXGXXGXPPNPGXTPEKTFXPRAPQRPXNPKKGP 739
P P P P P+ PPP P+ G P +AP P + P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = +2
Query: 572 PXPPPXXPXPRXXGXGXXFPPPXXGXXGXPPNPGXTPEKTFXPRAPQRP 718
P PPP P PP PP P P+APQ+P
Sbjct: 207 PPPPPQQNYPPAASSSA--PPMQYQQTAYPPQQAPYPPVQAYPQAPQQP 253
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/68 (26%), Positives = 19/68 (27%)
Frame = +2
Query: 572 PXPPPXXPXPRXXGXGXXFPPPXXGXXGXPPNPGXTPEKTFXPRAPQRPXNPKKGPXWXX 751
P P P PPP PP P P P +P P K P
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPA--SAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
Query: 752 XFPXGPPP 775
P PP
Sbjct: 189 SLPSAVPP 196
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Frame = -2
Query: 687 FSGVXPGFGGKPXXPXXGGGNXXPXPKXRGQGXXGG-GXGXGPKNQXPXPXGG 532
F G G GG P P GG + G GG G G G P GG
Sbjct: 190 FGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242
Score = 26.2 bits (55), Expect = 6.5
Identities = 22/71 (30%), Positives = 24/71 (33%)
Frame = -2
Query: 669 GFGGKPXXPXXGGGNXXPXPKXRGQGXXGGGXGXGPKNQXPXPXGGXGXXXXXKPPXPPP 490
GFGG GGG+ P P G G GG G G + GG P
Sbjct: 189 GFGG------FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242
Query: 489 XPGKXKEXXGG 457
PG GG
Sbjct: 243 GPGGFGGGLGG 253
>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 683 EKTFXPRAPQRPXNPKKGPXWXXXF-PXGPPP 775
E+ PR P P NPK+ + F P G PP
Sbjct: 101 ERQHKPRKPFIPKNPKRSIYYDPIFNPYGVPP 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,569
Number of Sequences: 5004
Number of extensions: 36803
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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