Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D12
         (925 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       33   0.005
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   9.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 32.7 bits (71), Expect = 0.005
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +2

Query: 668 PGXTPEKTFXPRAPQR--PXNPKKGPXWXXXFPXGPPPXXGXSKKXXPP 808
           PG  P     P+APQR  P NP +GP      P G PP    S+    P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGP--PPGGPPGAPPSQNPSQMMISP 67



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +3

Query: 828 PXRGXLXXPXAXPPVXTPPRXPXPXSP 908
           P RG    P   PP   PP  P   +P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 635 PXXGXXGXPPNPGXTPEKTFXPRAP 709
           P     G PPNP   P     P AP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAP 55


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 184 LIQHSNTVKNIYFTP 140
           L  H+N + N+Y TP
Sbjct: 398 LASHNNLLNNVYSTP 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,215
Number of Sequences: 438
Number of extensions: 5924
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)