Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_D11
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 57 4e-09
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 54 3e-08
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 40 5e-04
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 40 5e-04
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 36 0.006
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 35 0.013
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 35 0.017
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 35 0.017
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 34 0.023
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 34 0.023
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 34 0.031
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 33 0.053
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 33 0.053
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 33 0.071
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 32 0.093
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 32 0.12
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 32 0.12
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 31 0.16
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 31 0.28
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 30 0.50
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 30 0.50
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 29 0.66
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.66
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 29 0.87
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 29 0.87
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 29 0.87
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 0.87
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 29 1.1
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 29 1.1
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 29 1.1
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 28 1.5
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 28 1.5
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 28 1.5
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 28 2.0
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 28 2.0
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 27 2.7
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 2.7
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 27 3.5
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 27 3.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.6
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 27 4.6
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 27 4.6
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 26 6.1
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 6.1
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 26 6.1
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 26 8.1
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 26 8.1
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 56.8 bits (131), Expect = 4e-09
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Frame = +1
Query: 157 DMHIKCFDTRT-DCS-KPSWSIDNAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNG 330
D ++ D R D S KP+ S+ +AH + + FNP+ F +A+ D + +WD RN
Sbjct: 256 DQYLHVHDIRRPDASTKPARSV-HAHSGPIHSVAFNPHNDFILATCSTDKTIALWDLRNL 314
Query: 331 KEPIFNRTDHSHWVWTVRYNSYHEQLLLTGSSDGRGLLYAAASICRDPDDDSEKTGKILE 510
+ + H V + ++ + E +L + S+D R L++ + I D + + G
Sbjct: 315 NQRLHTLEGHEDIVTKISFSPHEEPILASTSADRRTLVWDLSRIGEDQPAEEAQDG---P 371
Query: 511 DGVLQSYEQHEDSVYCSEWSTVEPWTFASLSYDARLVI 624
+L + H +W WT A+ + D L I
Sbjct: 372 PELLFMHGGHTSCTIDMDWCPNYNWTMATAAEDNILQI 409
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 226 HRQLVRDLDFNPNRQFHVASAGDDAALNIW 315
H D+D+ PN + +A+A +D L IW
Sbjct: 381 HTSCTIDMDWCPNYNWTMATAAEDNILQIW 410
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 54.0 bits (124), Expect = 3e-08
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 3/159 (1%)
Frame = +1
Query: 157 DMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKE 336
D ++ DTR + + + + AH + + + NP + +A+A D + +WD RN +
Sbjct: 257 DCTLQIHDTRLNPEEEAPKVIQAHSKAINAVAINPFNDYLLATASADKTVALWDLRNPYQ 316
Query: 337 PIFNRTDHSHWVWTVRYNSYHEQLLLTGSSDGRGLLYAAASICRDPDDDSEKTGKILEDG 516
+ H V+ + ++ + E +L + S+D R ++ I E+T + EDG
Sbjct: 317 RLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDLEKI------GEEQTPEDAEDG 370
Query: 517 ---VLQSYEQHEDSVYCSEWSTVEPWTFASLSYDARLVI 624
+L + H + + W E W SL+ D L I
Sbjct: 371 SPELLFMHGGHTNRISEFSWCPNERWVVGSLADDNILQI 409
Score = 48.0 bits (109), Expect = 2e-06
Identities = 42/135 (31%), Positives = 58/135 (42%), Gaps = 2/135 (1%)
Frame = +1
Query: 226 HRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKEPIFNRT--DHSHWVWTVRYNSYH 399
H +V D+ F+P + +AS DD L I D R E + HS + V N ++
Sbjct: 234 HTDIVNDVQFHPQHEALLASVSDDCTLQIHDTRLNPEEEAPKVIQAHSKAINAVAINPFN 293
Query: 400 EQLLLTGSSDGRGLLYAAASICRDPDDDSEKTGKILEDGVLQSYEQHEDSVYCSEWSTVE 579
+ LL T S+D L+ R+P L + E HED VY EWS +
Sbjct: 294 DYLLATASADKTVALWD----LRNPYQR------------LHTLEGHEDEVYGLEWSPHD 337
Query: 580 PWTFASLSYDARLVI 624
AS S D R+ I
Sbjct: 338 EPILASSSTDRRVCI 352
Score = 28.7 bits (61), Expect = 1.1
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Frame = +1
Query: 172 CFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGK------ 333
C D T ++ H L +NPN ++A+ +D + +WD +
Sbjct: 163 CHDALTTGEALPQAVLKGHTAEGFGLCWNPNLPGNLATGAEDQVICLWDVQTQSFTSSET 222
Query: 334 ---EPIFNRTDHSHWVWTVRYNSYHEQLLLTGSSD 429
PI H+ V V+++ HE LL + S D
Sbjct: 223 KVISPIAKYHRHTDIVNDVQFHPQHEALLASVSDD 257
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 226 HRQLVRDLDFNPNRQFHVASAGDDAALNIW 315
H + + + PN ++ V S DD L IW
Sbjct: 381 HTNRISEFSWCPNERWVVGSLADDNILQIW 410
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 39.9 bits (89), Expect = 5e-04
Identities = 26/89 (29%), Positives = 48/89 (53%)
Frame = +1
Query: 154 QDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGK 333
+D HI D R + + + AHRQ V L++N N +AS G+D AL +WD + +
Sbjct: 351 RDNHILHRDVRAP--EHYFRVLTAHRQEVCGLEWNSNENL-LASGGNDNALMVWD-KFEE 406
Query: 334 EPIFNRTDHSHWVWTVRYNSYHEQLLLTG 420
+P+++ +H V + ++ + +L +G
Sbjct: 407 KPLYSFHNHIAAVKAITWSPHQRGILASG 435
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 39.9 bits (89), Expect = 5e-04
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 214 IDNAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNS 393
I AH VRD+ F+PN V +A DD +L +W++ E + T H W V+
Sbjct: 159 IVQAHEMEVRDVAFSPNDSKFV-TASDDGSLKVWNFHMSTEEL-KLTGHG---WDVKTVD 213
Query: 394 YH--EQLLLTGSSD 429
+H + LL +GS D
Sbjct: 214 WHPSKGLLASGSKD 227
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 36.3 bits (80), Expect = 0.006
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +1
Query: 223 AHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKEPIFNRTD-HSHWVWTVRYNSYH 399
AH++ + +P+ + H+A+ DA +NIW + + R H WVW + S
Sbjct: 213 AHQRYITRCVLSPDVK-HLATCSADATVNIWSTEDMSFMLERRLQGHQRWVWDCAF-SAD 270
Query: 400 EQLLLTGSSDGRGLLYAAAS 459
L+T SSD L+ +S
Sbjct: 271 STYLVTASSDHVARLWELSS 290
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 35.1 bits (77), Expect = 0.013
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +1
Query: 220 NAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYH 399
+ H VR + F+P + V S GDD +N+W+Y++ ++ +F+ H +V + +H
Sbjct: 50 DGHDGPVRGIAFHPTQPLFV-SGGDDYKVNVWNYKS-RKLLFSLCGHMDYVRVCTF--HH 105
Query: 400 EQLLLTGSSD 429
E + SD
Sbjct: 106 EYPWILSCSD 115
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 34.7 bits (76), Expect = 0.017
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Frame = +1
Query: 226 HRQLVRDLDFNPNRQFHVASAGDDAALNIW----DYR-----NGKEPIFNRTDHSHWVWT 378
H V D D+NP +AS GDD+ + IW DY PI HS V
Sbjct: 80 HTAAVLDTDWNPFHDQVLASGGDDSKIMIWKVPEDYTVMEPYEDVHPIAELKGHSRKVGL 139
Query: 379 VRYNSYHEQLLLTGSSD 429
V+Y+ +L + S+D
Sbjct: 140 VQYHPTAANVLASSSAD 156
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 34.7 bits (76), Expect = 0.017
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +1
Query: 277 VASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYHEQLLLTG 420
+AS G+D + IWD R+ P F +T+H+ V V + + LL TG
Sbjct: 319 LASGGNDNVVQIWDARS-SIPKFTKTNHNAAVKAVAWCPWQSNLLATG 365
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 34.3 bits (75), Expect = 0.023
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +1
Query: 208 WSIDNAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRY 387
W+I AH + V + + + + +ASA D + +WD G E + H VW +
Sbjct: 459 WTI-KAHDRDVNAIQVSKDGRI-IASASQDKTIKLWDSSTG-EVVGVLRGHRRGVWACSF 515
Query: 388 NSYHEQLLLTGSSD 429
N + Q L +GS D
Sbjct: 516 NPFSRQ-LASGSGD 528
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 34.3 bits (75), Expect = 0.023
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 139 FCLFLQDMHIKCFDTRTDCSKPSWSIDNAH--RQLVRDLDFNPNRQFHVASAGDDAALNI 312
F + D I+ + + +P I +AH +Q + L F+ + + + S G+D AL +
Sbjct: 266 FATAVLDGSIQFWQKGSRTKRPVMKIKDAHLPQQGISCLSFSQDGNY-LLSRGEDNALRV 324
Query: 313 WDYRNGKEPIFNRTD 357
WD RN + + R D
Sbjct: 325 WDLRNSNKCVNERID 339
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 33.9 bits (74), Expect = 0.031
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +1
Query: 154 QDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGK 333
+D IK +D T + +S H Q + LDF+ N +F V+ +GD A +WD G+
Sbjct: 380 EDRQIKLWDLSTQKVRYVFS---GHEQDIYSLDFSHNGRFIVSGSGDRTA-RLWDVETGQ 435
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 33.1 bits (72), Expect = 0.053
Identities = 19/70 (27%), Positives = 38/70 (54%)
Frame = +1
Query: 220 NAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYH 399
NAH V L + + +ASA + + +WD R+ + + + HS V+++ + SY
Sbjct: 526 NAHHSPVSALCMSADG-LSLASADESGIIKVWDLRSSNQHV-SFVKHSSIVYSLSF-SYD 582
Query: 400 EQLLLTGSSD 429
++L++G +D
Sbjct: 583 NKILVSGGAD 592
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 33.1 bits (72), Expect = 0.053
Identities = 25/71 (35%), Positives = 36/71 (50%)
Frame = +1
Query: 220 NAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYH 399
+ H V L + N+Q +AS G+D + IW GKE + T + VW+V +S
Sbjct: 212 HGHTSFVYSLTYIHNQQL-IASCGEDRTIRIW---KGKECLQCITLPTTSVWSV--SSLP 265
Query: 400 EQLLLTGSSDG 432
L+ GSSDG
Sbjct: 266 NGDLVCGSSDG 276
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 32.7 bits (71), Expect = 0.071
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = +1
Query: 154 QDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGK 333
QD IK +D + S ++ + + RD+ F+P+ +A D L WD R K
Sbjct: 155 QDGLIKLWDYKESSSTITF---RGNSEAARDVVFSPSEPNEFVAAYDSGILQKWDIRFPK 211
Query: 334 EPIFNRTDHSHWVWTVRYN 390
P H+ V V Y+
Sbjct: 212 LPFLKLAAHNGVVLCVNYS 230
Score = 32.3 bits (70), Expect = 0.093
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 304 LNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYHEQLLLTGSSDG 432
LN+WD N + +++ +HS V + +S+H +LT S DG
Sbjct: 116 LNVWDV-NLEALLYDFNEHSRAVHKLDISSFHPSYVLTASQDG 157
Score = 31.1 bits (67), Expect = 0.22
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 220 NAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKEPI 342
N H + V LD + +V +A D + +WDY+ I
Sbjct: 131 NEHSRAVHKLDISSFHPSYVLTASQDGLIKLWDYKESSSTI 171
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 32.3 bits (70), Expect = 0.093
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 124 RHNWRFCLFLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHVASAGDDAA 303
RH+ R Q+ C+ + + P + H+ V ++DF+P +AS DD
Sbjct: 341 RHSGRIVSACQEY---CYVWNFNKANPLEFVHAGHKGTVNEVDFDPFEAQCIASVADDNE 397
Query: 304 LNIW 315
L+IW
Sbjct: 398 LHIW 401
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 31.9 bits (69), Expect = 0.12
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 277 VASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYHEQLLLTG 420
+AS G+D L +WDYR+ + P+ +H+ V + ++ + +L +G
Sbjct: 264 LASGGNDNNLFVWDYRSSR-PLHKFEEHTAAVKAIGWSPHQRGILASG 310
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +1
Query: 220 NAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYH 399
N H + F+P+ + + D +WD + + PI H++WV V + +
Sbjct: 131 NGHDGTIISAQFSPSTSSRLVTGSGDFTARLWDC-DTQTPIATMKGHTNWVSCVAW-APD 188
Query: 400 EQLLLTGSSD 429
++ TGS D
Sbjct: 189 ASIIATGSMD 198
Score = 30.3 bits (65), Expect = 0.38
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +1
Query: 154 QDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDY 321
QD +K +D R+ K + + H V +D++P+ Q VAS G D A+ IW +
Sbjct: 451 QDTTLKVWDVRS--KKMKFDLPG-HEDQVFAVDWSPDGQ-RVASGGADKAVRIWSH 502
Score = 26.2 bits (55), Expect = 6.1
Identities = 34/116 (29%), Positives = 45/116 (38%)
Frame = +1
Query: 277 VASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYHEQLLLTGSSDGRGLLYAAA 456
+ SA DD L +WD + +PI H V + S+ S DGR + A A
Sbjct: 361 LVSASDDLQLILWDPQKSTKPITKMHGHQK---VVNHASF--------SPDGRCI--ATA 407
Query: 457 SICRDPDDDSEKTGKILEDGVLQSYEQHEDSVYCSEWSTVEPWTFASLSYDARLVI 624
S KTGK L + H +VY WST + S S D L +
Sbjct: 408 SFDSSVRLWDGKTGKF-----LATLRGHVAAVYQCAWST-DSRLLVSSSQDTTLKV 457
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 31.5 bits (68), Expect = 0.16
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +1
Query: 226 HRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYN 390
H V + NP+RQ SAG DA + IW+ +G E + HS+ V V +N
Sbjct: 616 HVGRVYSVTINPSRQ-QCISAGTDAKIRIWNLESG-ELLQTLHGHSNLVSQVTFN 668
Score = 29.1 bits (62), Expect = 0.87
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Frame = +1
Query: 169 KCFDTRTDCSKPSWSIDNA--------HRQLVRDLDFNPNRQFHVASAGDDAALNIWDYR 324
+C TD W++++ H LV + FN N ASA D +L +WD
Sbjct: 631 QCISAGTDAKIRIWNLESGELLQTLHGHSNLVSQVTFNQNILVS-ASAPPDTSLRVWDLN 689
Query: 325 NG 330
G
Sbjct: 690 TG 691
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 30.7 bits (66), Expect = 0.28
Identities = 24/91 (26%), Positives = 41/91 (45%)
Frame = +1
Query: 157 DMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKE 336
D I +D RT S P + R + +NP F+ + +D L ++D RN K
Sbjct: 209 DRSIVIYDLRT--SSPLTKLITKLR--TNSISWNPMEAFNFVAGSEDHNLYMYDMRNLKR 264
Query: 337 PIFNRTDHSHWVWTVRYNSYHEQLLLTGSSD 429
+ DH V +V ++ ++ ++GS D
Sbjct: 265 ALHVYKDHVSAVMSVDFSPTGQE-FVSGSYD 294
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 29.9 bits (64), Expect = 0.50
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 298 AALNIWDYRNGKEPIFNRTD-HSHWVWTVRYNSYHEQLLLTGSSDG 432
A++ +WD R+ ++ I D H+ + ++++ +LLLTGS DG
Sbjct: 124 ASVQLWDVRSEQKLIRQWNDAHNDDITHLQFHPKDNELLLTGSVDG 169
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 29.9 bits (64), Expect = 0.50
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +1
Query: 226 HRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYHEQ 405
H+ V + NP AS G D IWD G E I T H + + + S+
Sbjct: 60 HKDSVFSVSINPVHSNLCASGGGDDLGYIWDITTG-EQICQLTGHKDSIVAIDW-SFDGT 117
Query: 406 LLLTGSSDGRGLLYAAAS 459
+ TG D + L+ +++
Sbjct: 118 YIATGGMDSQVRLWKSST 135
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.5 bits (63), Expect = 0.66
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 226 HRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKEP-IFNRTDHSHWVWTVRYNSY-H 399
H V LD++ + +F + S DD L +WD N +P T H +++ ++ Y +
Sbjct: 44 HTGCVNTLDWSADGEF-LLSGSDDTRLIVWDVFNEYKPRHLISTGHVQNIFSAKFVPYSN 102
Query: 400 EQLLLTGSSD 429
+ +L+ S D
Sbjct: 103 NRQILSASGD 112
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.66
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 220 NAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRN 327
+ H + V + +NP + ASAGDD + IW ++
Sbjct: 467 SGHVKCVNYVAYNPVDPYQFASAGDDNTVRIWSNKD 502
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 29.1 bits (62), Expect = 0.87
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +1
Query: 223 AHRQLVRDLDFNP-NRQFHVASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYH 399
AH + V +++ P + ++ +AGDD + +WDY+ K + H++ V + +H
Sbjct: 182 AHDRGVNYVNYYPAGDKPYLITAGDDNLIKVWDYQT-KACVRILEGHTN---NVSFAFFH 237
Query: 400 EQ--LLLTGSSDG 432
+ ++++GS DG
Sbjct: 238 SKFPIIISGSEDG 250
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 157 DMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDY 321
DM IKCF+ D S H + V L NP AS+ D + +W +
Sbjct: 119 DMTIKCFNW--DMSWKCVQTFEGHSRYVMSLAINPKDTNTFASSCLDGTVKVWSF 171
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 29.1 bits (62), Expect = 0.87
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +1
Query: 274 HVASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYHEQLLLTGSSD 429
++ASA DD + IWD+ + + H+++V ++ +N LL++GS D
Sbjct: 110 YLASASDDKTIRIWDFEK-RCSVRCLKGHTNYVSSIDFNPL-GTLLVSGSWD 159
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 29.1 bits (62), Expect = 0.87
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +1
Query: 388 NSYHEQLLLTGSSD--GRGLLYAAASICRDPDDDSEKTGKILEDGVLQSYEQHEDSVYCS 561
+SYH +L SS+ LL + ++ D + K + ++S+ H D V C
Sbjct: 250 DSYHTDAVLALSSNRNAHNLLVSGSA------DTTLKLWDLSTCNCVKSFTYHSDKVSCL 303
Query: 562 EWSTVEPWTFASLSYD 609
+W + P S SYD
Sbjct: 304 DWYSKAPSVLLSGSYD 319
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 29.1 bits (62), Expect = 0.87
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 277 VASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYHEQLLLTGSSD 429
V+S G+DA IWD R+GK I +H + + ++ QL + + D
Sbjct: 322 VSSGGNDAIGRIWDLRSGKS-IMVLDEHIRQIVAMAWSPNGYQLATSSADD 371
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 274 HVASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNS 393
H +G+D ++ +WD R GK F TD + +W V +++
Sbjct: 640 HKIISGNDGSVKLWDVRTGKLLRFLLTDLTK-IWHVDFDA 678
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = +1
Query: 142 CLFLQDMHIKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHVASAGDDAALNIWD 318
C+ + M I F S S S + V DL P +V S D + LNIWD
Sbjct: 234 CVSCERMGINGFKKLFHTSATSTSCSSKSSSDVSDLSSLPQSNRYVISEEDRSFLNIWD 292
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = +1
Query: 253 FNPNRQFHVASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYHEQLLLTGSSDG 432
++ N + V + D +L ++D +PI +H + + N+ ++++TGS DG
Sbjct: 67 WSQNCENQVYACCGDGSLRLFDLTMPSKPIHKWKEHKAEIVAIDTNTVDRRIVVTGSWDG 126
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 28.3 bits (60), Expect = 1.5
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Frame = +1
Query: 253 FNPNRQFHVASAGDDAALNIWDYRN-----GK-EPIFNRTDHSHWV--WTVRYNSYHEQL 408
F P F + SA DD LN+W+ R+ GK P +R + V+YN ++QL
Sbjct: 264 FVPQGNFVIGSA-DDRTLNVWNLRHTFHHKGKTRPPEHRIVSQSIINPGLVKYNPRYDQL 322
Query: 409 LLTGS 423
L GS
Sbjct: 323 LTAGS 327
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/86 (18%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +1
Query: 199 KPSWSI-DNAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKEPIFNRTDHSHWVW 375
KP+ S DN+ + +D++ + ++ + D + I+D + K+ + T +
Sbjct: 10 KPAQSFRDNSLGSFINSIDYSDSGEYVATTCSADDTVQIYDALDPKQ-VHTITCFETGIE 68
Query: 376 TVRYNSYHEQLLLTGSSDGRGLLYAA 453
R+ + LLL+ + + + Y +
Sbjct: 69 VARFTHHDHNLLLSTTKGNKDIQYVS 94
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 223 AHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKEPIFNR--TDHSHWVWTVRYNSY 396
AH ++F+P+ + H+A G DA ++WD +E I R T + + T+ + SY
Sbjct: 192 AHNSNCFCIEFSPDNR-HLAIGGADAITSLWD---PQELICERSITRMDYPIRTLSF-SY 246
Query: 397 HEQLLLTGSSD 429
+ L +GS D
Sbjct: 247 DSRYLASGSED 257
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 226 HRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGK 333
H V+ L F N + V + DD+ + IWD R +
Sbjct: 374 HSSPVKTLQFGENGYWLVVTTNDDSDIFIWDLRKSE 409
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +1
Query: 220 NAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYH 399
+AH+ V F P S DD + +WD G ++ + H +V T + S
Sbjct: 120 DAHQFPVHVTQFCPYANTTFLSGSDDKTVKVWDLSTGAVQ-YDLSGHEDYVRTASWMS-- 176
Query: 400 EQLLLTGSSDG 432
L++G DG
Sbjct: 177 ATRLVSGGYDG 187
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/89 (20%), Positives = 34/89 (38%)
Frame = +1
Query: 166 IKCFDTRTDCSKPSWSIDNAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGKEPIF 345
+K DT T W +D + A+ D+ +++WD R I
Sbjct: 83 LKIADTSTGRVSSKWIVDKNKEISPYSVVQWIENDMVFATGDDNGCVSVWDKRTEGGIIH 142
Query: 346 NRTDHSHWVWTVRYNSYHEQLLLTGSSDG 432
DH ++ ++ + + E+ + S DG
Sbjct: 143 THNDHIDYISSI--SPFEERYFVATSGDG 169
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 254 KSRSRTNCLCALSMLQDGFEQSVRVSKHFMCISC 153
+S S +C C + + + QS K+ +CISC
Sbjct: 230 QSDSPQHCYCCGNKFNESYYQSQTAQKYNVCISC 263
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +1
Query: 238 VRDLDFNPNRQFHVASAGDDAALNI---WDYRNGKEPIFNRTDHSHWVWTVRYNSYHEQL 408
V + ++PN +A+A DD I WD R P T H ++ +
Sbjct: 216 VNSIAWHPNNATRLATAIDDNRNPIILTWDLRQPTVPQNILTGHQKAALSLSWCPEDPTF 275
Query: 409 LLTGSSDGRGLLY 447
LL+ DGR +++
Sbjct: 276 LLSSGKDGRAMVW 288
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 247 LDFNPNRQFHVASAGDDAALNIWDYRNGKEPI-FNRTDHSHWVWTVRYNSYHEQLLLTGS 423
LDFN + +AS + + +WD ++ ++P + + S V V +N+ +L +G+
Sbjct: 123 LDFNRLQPNLLASGDNKGDVWVWDIKHPQQPFALPKQNRSSEVHVVSWNNKVSHILASGN 182
Query: 424 S 426
+
Sbjct: 183 A 183
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 397 HEQLLLTGSSDGRGLLYAAASICRDPDDDSEKTGKILEDGVLQSYEQHEDSVY 555
+EQ++ + D GL+Y+ + SE+T IL D S++ ED+ Y
Sbjct: 119 YEQVIFQWNCDNEGLVYSQDGVPLQAFSGSERTDFILPD----SWKTTEDTFY 167
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 226 HRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGK 333
H+ VR L + + + +AS GDD L IW+ G+
Sbjct: 378 HKGRVRCLSVHVSGNW-LASGGDDGVLRIWEVMTGR 412
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -3
Query: 140 NLQLCLVGPVIFQNSRTIKSLLSCS-PNPDVKESKILRNS 24
NL+L ++ +IF+N +++ S L PN + S ILR++
Sbjct: 668 NLELLMIKSIIFKNGKSLNSHLFLQIPNINFIVSTILRDN 707
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +1
Query: 226 HRQLVRDLDFNP-NRQFHVASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYHE 402
H V + +P NRQ V S D + IW+ + HS WV VR++ +
Sbjct: 104 HTSDVLSVSISPDNRQ--VVSGSRDKTIKIWNIIGNCKYTITDGGHSDWVSCVRFSPNPD 161
Query: 403 QL 408
L
Sbjct: 162 NL 163
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 4.6
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Frame = +1
Query: 184 RTDCSKPSWSID-NAHRQLVRDLDFNPNRQFHVASAGDDAALNIWDYRNGK-----EPIF 345
R + + W D N + +DF N A+ G D+ + IW + E +
Sbjct: 2 RAEVLQIRWHYDANDDHTPIYSVDFQKNSLNKFATCGGDSKIRIWQLITSESSTKVEYLS 61
Query: 346 NRTDHSHWVWTVRYNSYHEQLLLTGSSDGRGLLY 447
+ H+ V VR+N +L T +G +L+
Sbjct: 62 TLSRHTQAVNVVRFNP-EGNILATAGDEGTIMLW 94
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +1
Query: 289 GDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYHEQ---LLLTGSSDGRGLLY 447
GD + +WD+R + +T S +E LL+TGSSDG LY
Sbjct: 1009 GDKDIIQVWDWRRNRCLNSFKTSASATTNVTDMQLLNEDDVALLMTGSSDGTIKLY 1064
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 277 VASAGDDAALNIWDYRNGKEPIFNRTDHSHWVWTVRYNSYHEQLLLTGSSD 429
VAS D + IWD R G P+ + H+ + +++++S H L +GS D
Sbjct: 509 VASGTVDGLIRIWDLRIGL-PVRSFIGHTAPISSLQFDSNH---LYSGSYD 555
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 584 GPSPLSATMRGWSSRESLDRSNTNFYC 664
G SP A+ W+ +L+ NT YC
Sbjct: 19 GSSPSKASSLNWNEPHTLNEQNTYCYC 45
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 226 HRQLVRDLDFNPNRQFHVASAGDDAALNIWD 318
H+ V + + P + +A+ GDD +++WD
Sbjct: 314 HKGDVNAVKWMPGSKSKLATCGDDCVVSLWD 344
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.8 bits (54), Expect = 8.1
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +1
Query: 226 HRQLVRDLDFNPNRQFHVASAGDDAALNIWD 318
HR + ++++PN + G D +++WD
Sbjct: 386 HRAPIYSIEWHPNEDSVIGVVGADNQISLWD 416
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,448,124
Number of Sequences: 5004
Number of extensions: 69296
Number of successful extensions: 295
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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