Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D10
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   1.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   4.8  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   6.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   8.5  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 112 YNNYK*LFKQSFQKYTL*NILDAYI*SVMKIPIMIPV 222
           YNNY      ++  Y        YI ++ +IP+ +P+
Sbjct: 327 YNNYNNYNNNNYNNYNKKLYYKNYIINIEQIPVPVPI 363


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 256 IYSAAALRFASTQPD-KQVYFDVTADGEPLGRIVIKLNTD 372
           IYS A L+     PD K++Y D+ ++   L R V+  NT+
Sbjct: 19  IYSVAGLKIFEANPDTKRLYDDLLSNYNRLIRPVMN-NTE 57


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 195 DENPNHDTGINASANFSQWDNI 260
           DE    + G+    NF ++DNI
Sbjct: 161 DEKSLFENGVEIGINFDKYDNI 182


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +1

Query: 49  REVINLTNASFVYQMTT*EWEYNNYK*LFKQSFQKYTL*NILDAYI*SVMKIPIMIPV 222
           R++I+  + ++ Y     ++ YNNY    K+ + K         YI ++ +IP+ +PV
Sbjct: 312 RKIISSLSNNYNYNNNNYKYNYNNYN---KKLYYK--------NYIINIEQIPVPVPV 358


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 115 NNYK*LFKQSFQKYTL*NILDAYI*SVMKIPIMIPV 222
           NNYK     ++  Y        YI ++ +IP+ +P+
Sbjct: 87  NNYKYSNYNNYNNYNKKLYYKNYIINIEQIPVPVPI 122


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 408 RASKVLSSFRYFIRVQFYDYTSQWLSVSSYIEINLFIRL 292
           R +K+LS  R     +   Y SQW  V      ++F+R+
Sbjct: 209 RLAKLLSLVRLLRLSRLVRYVSQWEEVYFLNMASVFMRI 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,155
Number of Sequences: 438
Number of extensions: 5390
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)