Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_D09
(896 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY217747-1|AAP45005.1| 246|Apis mellifera short-chain dehydroge... 58 1e-10
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 26 0.54
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 23 2.9
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 23 2.9
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 23 2.9
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 23 2.9
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 23 5.0
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 8.7
>AY217747-1|AAP45005.1| 246|Apis mellifera short-chain
dehydrogenase/reductase protein.
Length = 246
Score = 58.0 bits (134), Expect = 1e-10
Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 4/188 (2%)
Frame = +1
Query: 100 EKKMSTKVAVVTGANKGIGFAIVRGLCKRFNGTVYLTSRDEERGKIAVETLKNEGLNPSY 279
E+ +VA+VTGAN GIG ++ L + + + + ++ K VE LK++
Sbjct: 2 EQNWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKM-KTLVEELKSKPGKLVP 60
Query: 280 HQLDITNKKSVESFRDYIKTKYEGIDILINNAAIAFKQNATEPVAVQAEQTLYVNFFSLT 459
Q D++N+ + ++++ IDILINNA I + ++ +N LT
Sbjct: 61 LQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLT 120
Query: 460 STCEILFPIVK----NGGRVINVSSSAGHLSRIPSENLRNKLKDPKLTLPELIALMQKYV 627
+ + ++K N G ++N++ ++G L+ +P R K L L ++ +
Sbjct: 121 CMIQEVLKLMKKKGINNGIIVNINDASG-LNLLPMNRNRPAYLASKCALTTLTDCLRSEL 179
Query: 628 DDAKQGIQ 651
+ I+
Sbjct: 180 AQCESNIK 187
Score = 22.2 bits (45), Expect = 6.6
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 738 DRDIKVNAVHPGYLDTDMTS 797
+ +IKV ++ P ++TDMT+
Sbjct: 183 ESNIKVISISPDLVETDMTA 202
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 25.8 bits (54), Expect = 0.54
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Frame = -3
Query: 399 CVLFKCYGCIIYQNINSFIFGFYVIPKTFHAFLVCYIKLVVARV*AFVFQSFHCYF---P 229
CV+ + + IY + SF +V+ + ++ ++V+ A HCYF P
Sbjct: 194 CVVCQNFFYQIYATLGSFYIPLFVMIQVYYKIFCAARRIVLEERRAQSHLEAHCYFDIEP 253
Query: 228 TL-----FVTRCQINSSVEAFAESSDNCETYAFISSSYDSNFSGH 109
T+ Q+NS V+ S + + SSS + SGH
Sbjct: 254 TVQQHQPVTVNRQLNSDVQP-GHGSPPVKQHR--SSSASTTCSGH 295
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 23.4 bits (48), Expect = 2.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 358 ILINNAAIAF--KQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 495
IL+ ++ I F + NA P V T +NFF+ ++ P+V N
Sbjct: 313 ILVTSSFITFWLEWNAV-PARVMIGVTTMLNFFTTSNGFRSTLPVVSN 359
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 23.4 bits (48), Expect = 2.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 358 ILINNAAIAF--KQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 495
IL+ ++ I F + NA P V T +NFF+ ++ P+V N
Sbjct: 282 ILVTSSFITFWLEWNAV-PARVMIGVTTMLNFFTTSNGFRSTLPVVSN 328
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 23.4 bits (48), Expect = 2.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 358 ILINNAAIAF--KQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 495
IL+ ++ I F + NA P V T +NFF+ ++ P+V N
Sbjct: 333 ILVTSSFITFWLEWNAV-PARVMIGVTTMLNFFTTSNGFRSTLPVVSN 379
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 23.4 bits (48), Expect = 2.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 358 ILINNAAIAF--KQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 495
IL+ ++ I F + NA P V T +NFF+ ++ P+V N
Sbjct: 282 ILVTSSFITFWLEWNAV-PARVMIGVTTMLNFFTTSNGFRSTLPVVSN 328
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 22.6 bits (46), Expect = 5.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -3
Query: 264 AFVFQSFHCYFPTLFVTRCQIN 199
+F Q FHCY P F + N
Sbjct: 421 SFFQQFFHCYCPVRFGRKADPN 442
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.8 bits (44), Expect = 8.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 741 RDIKVNAVHPGYLDTDM 791
RD+ V AV Y DTD+
Sbjct: 93 RDVNVRAVVAQYYDTDV 109
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,572
Number of Sequences: 438
Number of extensions: 4213
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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