Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D08
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    24   1.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.2  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   3.8  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    23   3.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   3.8  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    23   3.8  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   3.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   3.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   3.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   5.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.7  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   8.8  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   8.8  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   8.8  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   8.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   8.8  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 SQAHGYNKLFTQGSAESNCSQPSSELSLDDDK--EALRREKE 292
           S+ HG+    ++ S E +CS+  +    + D+  E L  EKE
Sbjct: 208 SRTHGFQHTSSRYSRERSCSRDRNREYKEKDRRYEKLHNEKE 249


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 SQAHGYNKLFTQGSAESNCSQPSSELSLDDDK--EALRREKE 292
           S+ HG+    ++ S E +CS+  +    + D+  E L  EKE
Sbjct: 219 SRTHGFQHTSSRYSRERSCSRDRNREYKEKDRRYEKLHNEKE 260


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 SQAHGYNKLFTQGSAESNCSQPSSELSLDDDK--EALRREKE 292
           S+ HG+    +  S E +CS+  +    + D+  E L  EKE
Sbjct: 219 SRTHGFQHTSSHYSRERSCSRDRNREYKEKDRRYEKLHNEKE 260


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 517 GRDEPYVRVLRHEPTDPP 464
           GRD+  V++L  EP  PP
Sbjct: 894 GRDQQLVQLLVQEPPQPP 911


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 517 GRDEPYVRVLRHEPTDPP 464
           GRD+  V++L  EP  PP
Sbjct: 890 GRDQQLVQLLVQEPPQPP 907


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 SQAHGYNKLFTQGSAESNCSQPSSELSLDDDK--EALRREKE 292
           S+ HG+    ++ S E +CS+  +      D+  E L  EKE
Sbjct: 208 SRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKE 249


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 SQAHGYNKLFTQGSAESNCSQPSSELSLDDDK--EALRREKE 292
           S+ HG+    ++ S E +CS+  +      D+  E L  EKE
Sbjct: 219 SRTHGFQHTSSRYSRERSCSRDRNREYRKKDRRYEKLHNEKE 260


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 SQAHGYNKLFTQGSAESNCSQPSSELSLDDDK--EALRREKE 292
           S+ HG+    ++ S E +CS+  +      D+  E L  EKE
Sbjct: 219 SRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKE 260


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 SQAHGYNKLFTQGSAESNCSQPSSELSLDDDK--EALRREKE 292
           S+ HG+    ++ S E +CS+  +      D+  E L  EKE
Sbjct: 219 SRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKE 260


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 SQAHGYNKLFTQGSAESNCSQPSSELSLDDDK--EALRREKE 292
           S+ HG+    ++ S E +CS+  +      D+  E L  EKE
Sbjct: 219 SRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKE 260


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 SQAHGYNKLFTQGSAESNCSQPSSELSLDDDK--EALRREKE 292
           S+ HG+    ++ S E +CS+  +      D+  E L  EKE
Sbjct: 219 SRTHGFQHTSSRYSRERSCSRDRNREYRKKDRRYEKLHNEKE 260


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 SQAHGYNKLFTQGSAESNCSQPSSELSLDDDK--EALRREKE 292
           ++ HG+    ++ S E +CS+  +    + D+  E L  EKE
Sbjct: 219 NRTHGFQHTSSRYSRERSCSRDRNREYREKDRRYEKLHNEKE 260


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 486 ATSRPIHQLLSYFSLMCRKSRT 421
           A++ P+H  L  F ++C   RT
Sbjct: 439 ASNIPVHATLEKFMILCNLMRT 460


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 440 IKEKYDNNW 466
           IK+KY NNW
Sbjct: 163 IKDKYPNNW 171


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 SQAHGYNKLFTQGSAESNCSQPSSELSLDDDK--EALRREKE 292
           ++ HG+    ++ S E +CS+  +      D+  E L  EKE
Sbjct: 208 NRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKE 249


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 SQAHGYNKLFTQGSAESNCSQPSSELSLDDDK--EALRREKE 292
           ++ HG+    ++ S E +CS+  +      D+  E L  EKE
Sbjct: 219 NRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKE 260


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 SQAHGYNKLFTQGSAESNCSQPSSELSLDDDK--EALRREKE 292
           ++ HG+    ++ S E +CS+  +      D+  E L  EKE
Sbjct: 219 NRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKE 260


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 SQAHGYNKLFTQGSAESNCSQPSSELSLDDDK--EALRREKE 292
           ++ HG+    ++ S E +CS+  +      D+  E L  EKE
Sbjct: 208 NRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKE 249


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 SQAHGYNKLFTQGSAESNCSQPSSELSLDDDK--EALRREKE 292
           ++ HG+    ++ S E +CS+  +      D+  E L  EKE
Sbjct: 208 NRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKE 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,577
Number of Sequences: 438
Number of extensions: 1971
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)