Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D07
         (882 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   4.2  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   4.2  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   9.7  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   9.7  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 81  LERWMSFFWNFSQI 40
           L++W SF+WN   I
Sbjct: 914 LDQWSSFYWNLLPI 927


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 81  LERWMSFFWNFSQI 40
           L++W SF+WN   I
Sbjct: 914 LDQWSSFYWNLLPI 927


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 192 LYNSKPDVRHHKGCLPEDRSSVWSLEMVPSEKLV 293
           LY+   D ++ K    E  +++W     P EKLV
Sbjct: 295 LYSPSSDSQYQKQLNVEHAANLWVKLGTPKEKLV 328


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +2

Query: 299 ISYTTDSFPGEYVPTVFDNYSAPMVVDGVAV 391
           IS   DSF   Y   V  NY  P V  GV +
Sbjct: 41  ISAILDSFSVSYDKRVRPNYGGPPVEVGVTM 71


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 401 LWDTAGQEDYDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWY 532
           LWD    E   RL   +  +  V L   ++T     EN+ S  Y
Sbjct: 398 LWDMFQNESLTRLYKKAGKEIPVILWTSTLTQKEYLENLPSDKY 441


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 500 SSYENVTSKWYPEIKHHCPDAPIILVGTKIDLRDD 604
           S Y+      YPE K    +  + L   K+D +DD
Sbjct: 87  SQYDTCQQGIYPENKTLINETSLQLDENKLDKKDD 121


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,964
Number of Sequences: 336
Number of extensions: 4254
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24410188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)