Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D07
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    24   2.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.5  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   8.6  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 683 FCWRASVLVPFSAETFLVPTANLAFHDHLSNRFL 582
           F W   +L+   A   ++P A   F+D LS R++
Sbjct: 89  FYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 683 FCWRASVLVPFSAETFLVPTANLAFHDHLSNRFL 582
           F W   +L+   A   ++P A   F+D LS R++
Sbjct: 89  FYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 683 FCWRASVLVPFSAETFLVPTANLAFHDHLSNRFL 582
           F W   +L+   A   ++P A   F+D LS R++
Sbjct: 89  FYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 302 SYTTDSFPGEYVPTVFDNYSAPMVVDGVAVSLGLWDTAG 418
           S T  SFPGE +  +   +  P++V  +   +   D  G
Sbjct: 92  SITLISFPGELLMRLLKMFILPLIVSSLISGMAQLDPKG 130


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +2

Query: 299 ISYTTDSFPGEYVPTVFDNYSAPMVVDGVAV 391
           IS   DSF   Y   V  NY  P V  GV +
Sbjct: 12  ISAILDSFSVSYDKRVRPNYGGPPVEVGVTM 42


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +2

Query: 299 ISYTTDSFPGEYVPTVFDNYSAPMVVDGVAV 391
           IS   DSF   Y   V  NY  P V  GV +
Sbjct: 12  ISAILDSFSVSYDKRVRPNYGGPPVEVGVTM 42


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = +2

Query: 428 YDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPDAP 565
           YD +    YP T       +  +P  Y  +++K+    K  C  +P
Sbjct: 290 YDDINQWVYPLTGCLYYFSTTINPILYNVMSAKYRNAFKETCRCSP 335


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 487 CNKSFFI*KCHIEMVPRNKTSLP 555
           C K++ + KC++E  P    ++P
Sbjct: 108 CEKAYQLVKCYVEFHPEVLQTVP 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,982
Number of Sequences: 438
Number of extensions: 4418
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)