Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_D06
(866 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 33 0.040
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 28 1.5
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 28 2.0
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 27 4.6
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 27 4.6
SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces... 26 8.0
>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 109
Score = 33.5 bits (73), Expect = 0.040
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 612 YFVFLLYSIN-ILFFNGTRGHIYTCLFRKGILCSSDY 719
+F FL + +N ILFF R H+Y+C FR I+C Y
Sbjct: 76 HFFFLFWLLNFILFF---RIHLYSCNFRMSIICEEYY 109
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 152 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSQNLKE 33
+GT++ I SGS+P ++ SGTV VV P + + E
Sbjct: 805 AGTVTETIVSGSIPFTSTIPAQGTTSGTVEVVEPTAGTVTE 845
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 152 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSQNLKE 33
+GT++ I SGS+P ++ SGTV VV P + + E
Sbjct: 910 AGTVTETIVSGSIPFTSTIPAQGTTSGTVEVVEPTAGTVTE 950
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 152 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSQNLKE 33
+GT++ I SGS+P ++ SGTV VV P + + E
Sbjct: 980 AGTVTETIVSGSIPFTSTIPAQGTTSGTVEVVEPTAGTVTE 1020
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 152 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSQNLKE 33
+GTI+ I SGSV ++ S SGTV VV P + + E
Sbjct: 210 AGTITETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTITE 250
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 152 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSQNLKE 33
+GT++ I SGSV ++ S SGTV VV P + + E
Sbjct: 350 AGTVTETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTITE 390
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 152 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSQNLKE 33
+GTI+ I SGSV ++ S SGTV VV P + + E
Sbjct: 560 AGTITETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVTE 600
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 152 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSQNLKE 33
+GT++ I SGSV ++ S SGTV VV P + + E
Sbjct: 630 AGTVTETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTITE 670
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 152 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSQNLKE 33
+GTI+ I SGSV ++ S SGTV VV P + + E
Sbjct: 735 AGTITETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVTE 775
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 152 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTP 54
+GT++ I SGS+P ++ SGTV +V P
Sbjct: 1050 AGTVTETIVSGSIPFTSTIPAQGTTSGTVEIVVP 1083
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 152 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSQNLKE 33
+GT++ I SGSV ++ S SGTV VV P + + E
Sbjct: 595 AGTVTETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVTE 635
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 152 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSQNLKE 33
+GTI+ I SGSV ++ + SGTV VV P + + E
Sbjct: 245 AGTITETIVSGSVGYTSTFPANGTTSGTVEVVEPTAGTITE 285
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 152 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSQNLKE 33
+GTI+ I SGSV ++ + SGTV VV P + + E
Sbjct: 280 AGTITETIVSGSVGYTSTFPANGTTSGTVEVVEPTAGTITE 320
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 152 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSQNLKE 33
+GTI+ I SGSV ++ + SGTV VV P + + E
Sbjct: 455 AGTITETIVSGSVGYTSTFPANGTTSGTVEVVEPTAGTITE 495
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 152 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSQNLKE 33
+GTI+ I SGSV ++ + SGTV VV P + + E
Sbjct: 315 AGTITETIVSGSVGYTSTFPANGTTSGTVEVVEPTAGTVTE 355
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 651 FNGTRGHIYTCLFRKGILCSSDYVYNIYWDISIAXFFSFLNKRLPVYFFFHKLSQ 815
F+ RG++Y ++ S + W IS+ F SFLN+RL +++ F + Q
Sbjct: 495 FSIPRGYVYLSEIKQ----YSSLILISLW-ISLILFVSFLNRRLILHYSFESVHQ 544
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = -3
Query: 285 QDREVFHRDEAAEGDDHDRHVEVRLCRRAWDHPYRHAWDHPYRHVWD 145
++++ F D++ E +D ++ V++ R D + W+ Y+ WD
Sbjct: 3 ENQKSFDSDKS-ESEDEQKNGRVKVRSRKTDDNEGYTWEGEYQRSWD 48
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 399 GLFCVCIWLVHVMRCNFIVCIN*MKKKINAALL 301
GL +C+++VH + C ++C + +NA L
Sbjct: 477 GLVRICLFIVHYLSCEKVLCEKLNRNCMNAQSL 509
>SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 155
Score = 25.8 bits (54), Expect = 8.0
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -2
Query: 490 SNAWILDFLKYVSFSLCELI 431
SNAW++ +Y+SF+L + +
Sbjct: 35 SNAWVISHREYLSFTLSDAV 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,633
Number of Sequences: 5004
Number of extensions: 65999
Number of successful extensions: 209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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