Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D05
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474...    32   0.70 
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   2.8  
10_08_0618 + 19307658-19308584,19308690-19309082                       29   3.8  
10_08_0619 + 19312935-19313570                                         29   6.6  
11_06_0012 + 19251085-19251666                                         28   8.7  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.7  
06_03_0218 + 18219956-18220555                                         28   8.7  
06_01_0964 - 7417158-7417517,7417596-7417868,7418400-7418810,741...    28   8.7  
03_06_0149 - 31987183-31987630,31987813-31987874                       28   8.7  
03_04_0061 - 16949038-16950006                                         28   8.7  

>09_04_0424 +
           17444261-17444665,17445974-17446367,17447367-17447425,
           17447507-17447637,17447737-17447833,17447936-17448100
          Length = 416

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 767 FAPSWAVCTNPPFSPTAAPYPVTIVLSQPGXH 862
           F P  AV   PP  P AAP PV + +  P  H
Sbjct: 67  FVPFHAVGPPPPPQPRAAPPPVAVAMGSPAPH 98


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 638 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 519
           SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>10_08_0618 + 19307658-19308584,19308690-19309082
          Length = 439

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 696 FLPSGS---VALSHSSRCRYLXFGVGRSLQAGL 785
           FLP G    V ++ S R R + FGVGR + AGL
Sbjct: 400 FLPGGDGEGVDMTGSKRIRMMPFGVGRRMCAGL 432


>10_08_0619 + 19312935-19313570
          Length = 211

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 696 FLPSGS---VALSHSSRCRYLXFGVGRSLQAGL 785
           FLP G    V ++ S R R + FGVGR + AG+
Sbjct: 112 FLPGGDGEGVDMTGSKRIRMMPFGVGRRMCAGI 144


>11_06_0012 + 19251085-19251666
          Length = 193

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -3

Query: 770 RTTYTEXEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRLVS 615
           RTT T  E   A   R+RH  RR+ GG   G R  R      G+  G  +V+
Sbjct: 69  RTTATAVEAQQA-LRRRRHGGRRDSGGGAGG-RGSRGGVGDLGSCGGTAIVA 118


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 302 NESAN---ARGEAVCVLGALPLPRSLTRCAR 385
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 710 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 615
           +RRE+  + +G  KR+GR R    G  RGKR  S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139


>06_01_0964 -
           7417158-7417517,7417596-7417868,7418400-7418810,
           7419270-7419347
          Length = 373

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = +3

Query: 636 GSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLXFGVGRSLQAG 782
           G SL    +  LP + Y S   P  SV L HSS C +    V   L+AG
Sbjct: 124 GDSLPSYYISGLPKS-YYSRLFPRQSVHLFHSSYCLHWRSQVPEGLEAG 171


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 731 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 630
           A+ + H   R +   +  +R+GR R AHEG   G
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 605 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 721
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,883,582
Number of Sequences: 37544
Number of extensions: 524857
Number of successful extensions: 1772
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1772
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)