Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D03
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    29   1.2  
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    28   2.0  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    26   6.2  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   6.2  

>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 361 RIPYGIP*ETALPIRRGSGRT*SQRASMTSCSRPPSNWQSYCDTHPP 501
           ++PY     + LPI        SQ+    S S+  SN    CD+HPP
Sbjct: 519 QLPYFHQSSSELPISASKRAALSQQTE--SASKSSSNISEMCDSHPP 563


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 232 RVWECHALSVKVARRSVSGTRHVPHL 309
           R W CH  ++K+ RRS    RH  HL
Sbjct: 18  RRW-CHECTIKIFRRSFDIARHTVHL 42


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +2

Query: 8   SYXLTIGNSLRFWLEACGHD-TRSCASRAFDTL*NKRKQRNRPTEPSAVVYFVTSARRKR 184
           SY  T G S R W +AC  +  + C      T+   R+      +P  +V  V S     
Sbjct: 16  SYTQTFGMSWRQWRQACSEEYAKQCEREVLHTVDFIRENEK---DPERLVEVVDSKIYDN 72

Query: 185 SGLV 196
            GLV
Sbjct: 73  DGLV 76


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 300 TTLGIPEADDPWKKIVEASPPDSIWHSLRNC 392
           T  G+P  DD W+  +    PDS+    ++C
Sbjct: 255 TIPGLPMVDDYWQDQIMVKIPDSLGECTQDC 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,044
Number of Sequences: 5004
Number of extensions: 63113
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)