Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D03
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0200 + 27476065-27476487                                         30   2.8  
12_01_0346 + 2652181-2653566                                           29   6.5  

>01_06_0200 + 27476065-27476487
          Length = 140

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +2

Query: 626 KRPVR--PPRPPGATCCSTGTWSWRFW 700
           +RP R  PP P  ATC   G W WR W
Sbjct: 27  ERPPRESPPLPTSATC-RRGRWWWRAW 52


>12_01_0346 + 2652181-2653566
          Length = 461

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +3

Query: 360 PDSIWHSLRNCVAYQAGVWQNLITKGIDDVMQPAAFKLAIVLRHTPTEDCAKLMSELLKT 539
           P  + H L   +A   G   + +    D+   P  F+L I      T D   L+ E  K 
Sbjct: 36  PPRVPHRLGTVIAVDLGNTNSCVAGYGDEADAPPLFRLCIPTSVAFTGDGDALVGEAAKN 95

Query: 540 HPVSV 554
           HP ++
Sbjct: 96  HPAAI 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,663,043
Number of Sequences: 37544
Number of extensions: 514794
Number of successful extensions: 1549
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)