Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D03
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.92 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          25   1.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.9  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   8.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   8.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   8.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   8.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 673 YGDLELAILAASREEYDAHAKLVRAEYSKLTQDNYVELRI 792
           + DL   +    +   D HAKLV+A + + T D  +++ +
Sbjct: 537 FNDLLTQVAELDQIYADTHAKLVQAAFEQNTTDQSMDIDV 576


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 635 VRPPRPPGATCCSTGTWS 688
           V P R P ATCC+T  WS
Sbjct: 191 VVPTRVP-ATCCTTXWWS 207


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 231 SSMGVSCPERQGCSAERIWYAACTTLGIPEADDPWKKIVEASPPDSI 371
           S  G+S   R GC + R++Y   T L        +KKI +A PP S+
Sbjct: 265 SQTGLSPYLRFGCLSTRLFYYQLTDL--------YKKIKKAVPPLSL 303


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 434 GHR*RHAAGRLQTGN 478
           GHR RH+   L TGN
Sbjct: 192 GHRQRHSTIHLSTGN 206


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 127 PPNRTVSSCIFCD 165
           PPNRT++S ++ +
Sbjct: 85  PPNRTINSVVYIE 97


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 229 SPHKLSACSSLYET*PLPPRRRHKI 155
           SP  L     + ET  LPPR+R K+
Sbjct: 448 SPDPLDLAIPVRETLILPPRKRCKM 472


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 127 PPNRTVSSCIFCD 165
           PPNRT++S ++ +
Sbjct: 206 PPNRTINSVVYIE 218


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 384 LGNAIWNPVVKLLRFSSMGRPL 319
           +G AI N  +   R+S++ RPL
Sbjct: 132 IGAAITNAAIAYDRYSTIARPL 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,262
Number of Sequences: 438
Number of extensions: 4746
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)