Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D02
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    75   2e-14
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   5.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   5.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   5.0  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    26   8.7  

>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
 Frame = +2

Query: 245 DLFNEELFIKPLPPAHLYTYFQF-----TTLVNDNLSSEHTY-LAPRSLVEVLTRFQVDE 406
           + ++E LFIK     + Y  F F     T   + ++ SE ++ L P S+  V+   QV E
Sbjct: 26  ETYDESLFIKSFSSRYSYVSFAFEIGASTDSTHSSVFSESSFSLFPLSIARVMDECQVSE 85

Query: 407 LHFTLTEGQWRHNHWGYP----VLDAAPGAELYAWFSSDVENVDTQWKKFSSTLAGLFCA 574
           LH   T G+W + +W             G E++A+ ++D       W K ++ L+GL CA
Sbjct: 86  LHIRATRGRWDYENWKESPDNGFYSGGLGFEVWAFMANDPSM--KYWLKLTNQLSGLLCA 143

Query: 575 SLNFIEDFNTITPQMALQPXGXLSHNXPY 661
           SLN+I+  NT  PQ++       S+N  Y
Sbjct: 144 SLNYIDSSNTYQPQLSYPGSFSFSNNTQY 172


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 506 SDVENVDTQWKKFSSTLAGLFCASLNFIEDFNTITPQMALQP 631
           S+  N+D  +K  +S    L C  ++  E F     Q+ L P
Sbjct: 543 SNSTNLDDDFKNLNSAANALHCGIIDITEKFQDFFTQLNLSP 584


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 383  LTRFQVDELHFTLTEGQWR 439
            L R  +DE H  LT G WR
Sbjct: 1316 LARVVIDEAHLLLTSGAWR 1334


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 383  LTRFQVDELHFTLTEGQWR 439
            L R  +DE H  LT G WR
Sbjct: 1316 LARVVIDEAHLLLTSGAWR 1334


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 619 HLRCYSVEIFNKI*RCTEQSCKGGTKFFPLCIN 521
           ++R YSVE+F+ I  C     K   + FP  I+
Sbjct: 130 YVRLYSVELFSAILSCRPTELKDCLQTFPSAIS 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,708
Number of Sequences: 5004
Number of extensions: 57245
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)