Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D02
         (930 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0306 + 16176873-16177124,16178155-16179152,16179204-161793...    96   4e-20
01_01_0464 - 3431298-3431315,3431586-3433339,3433340-3433589,343...    32   0.57 
09_04_0652 - 19227686-19227926,19229368-19232294                       29   4.0  
05_03_0250 + 10955281-10955419,10955524-10955727,10955985-109560...    29   4.0  
08_01_1082 - 11073874-11073988,11074072-11074133,11074217-110745...    29   5.3  

>11_04_0306 +
           16176873-16177124,16178155-16179152,16179204-16179339,
           16179448-16179597,16179711-16179891,16181139-16181298,
           16182156-16182378
          Length = 699

 Score = 95.9 bits (228), Expect = 4e-20
 Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 7/126 (5%)
 Frame = +2

Query: 236 ANGDLFNEELFIKPLPPAHLYTYFQFTTLVNDNLSS--EHTYLAPRSLVEVLTRFQVDEL 409
           A  + F EEL ++PLP      +F F +  + + ++   H +L P+++ +++ +F + EL
Sbjct: 34  AEEEEFTEELLLRPLPDRKALAHFHFRSSASPSAAAAGRHHHLFPKAIAQLVQQFHISEL 93

Query: 410 HFTLTEGQWRHNHWG-YPVLDA----APGAELYAWFSSDVENVDTQWKKFSSTLAGLFCA 574
             + T+GQW +  WG Y  +       PG EL+A F   ++ +D  WK  + TL+GLFCA
Sbjct: 94  ELSFTQGQWNYEQWGGYDPMSTNYAKPPGVELWAAFDLPLDEIDATWKNLTHTLSGLFCA 153

Query: 575 SLNFIE 592
           S+NF+E
Sbjct: 154 SINFLE 159


>01_01_0464 -
           3431298-3431315,3431586-3433339,3433340-3433589,
           3433716-3434041,3434297-3434618
          Length = 889

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +2

Query: 170 NRMFNSKNFLFFIAVFIETIFNANGDLFNEELFIKPLPPAH-LYTYFQFTTLVNDNLSSE 346
           N MF+S  F F   +   T+FNA G+ F+ E     +PP+    T  Q+  L N+N S  
Sbjct: 482 NNMFSSIPFNFTAHLSHVTLFNAPGNNFSGE-----IPPSFCTATELQYLDLSNNNFSGS 536

Query: 347 HTYLAPRSLVEVLTRFQVDELHFTLTEGQ 433
                P  L+E +   Q+  L+    +G+
Sbjct: 537 ----IPSCLIENVNGIQILNLNANQLDGE 561


>09_04_0652 - 19227686-19227926,19229368-19232294
          Length = 1055

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -2

Query: 503  KTKRIVLLQELHQAQDNPNDYASTAPRLV*NAVHQLGIVSTLPPKT*VLNR 351
            + KR+ ++ + HQ QDN N+      ++  +A+ ++ I    P  T  LNR
Sbjct: 895  RRKRMKMVGKAHQGQDNQNEQKENGKKVFRSAMRRILISKAPPVLTINLNR 945


>05_03_0250 +
           10955281-10955419,10955524-10955727,10955985-10956065,
           10956147-10956287,10956378-10956410,10956809-10956909,
           10957282-10957912,10959378-10959514
          Length = 488

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 144 YNQIKRQI*TGCLTRKTFC-FLLPYSLRQFLTLMVIYLMKSYLLNLYHRH 290
           YN + + + TG     T   + LPY LRQ   +M+++   S    L+  H
Sbjct: 426 YNSLVQAVSTGMTQGSTAAQWALPYQLRQLFVMMLLFCQVSNPTKLFDSH 475


>08_01_1082 -
           11073874-11073988,11074072-11074133,11074217-11074505,
           11074652-11074743,11074840-11074966,11075075-11075156,
           11075611-11075887,11075993-11076158,11076874-11077202
          Length = 512

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +2

Query: 281 PPAHLYTYFQFTTLVNDNLSSEHTYLAPRSLVEVLTRFQVDELHFTLT 424
           PP   YT    TT+ N  LS + T     + V + T   + ELH   T
Sbjct: 465 PPPMTYTSSPSTTIDNTGLSKDSTPPESSAAVNISTEKNMSELHILTT 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,187,056
Number of Sequences: 37544
Number of extensions: 336859
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)