Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D02
         (930 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72507-10|CAA96629.1|  531|Caenorhabditis elegans Hypothetical p...    62   5e-10
Z72507-13|CAH60789.1|  515|Caenorhabditis elegans Hypothetical p...    54   1e-07
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass...    29   4.7  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    29   4.7  
AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical...    28   8.3  
AF036706-16|AAM97947.1|  139|Caenorhabditis elegans Hypothetical...    28   8.3  
AF036706-15|AAK39285.1|  145|Caenorhabditis elegans Hypothetical...    28   8.3  

>Z72507-10|CAA96629.1|  531|Caenorhabditis elegans Hypothetical
           protein F17C11.7a protein.
          Length = 531

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
 Frame = +2

Query: 251 FNEELFIKPLPPAHLYTYFQFTTLVNDNLSSEH-TYLA-PRSLVEVLTRFQVDELHFTLT 424
           F+E+L + P+    L   F+F +    N  +E   YL  PR + E+L+R+ V +L  T+ 
Sbjct: 23  FDEKLTLSPVSKNELRVDFRFNSEREFNRKTESGDYLTFPRIIQELLSRYSVRKLTVTMA 82

Query: 425 EGQWRHNHWGYPVLDAAP-GAELYAWFSSD-VENVDTQWKKFSSTLAGLFCASLNFI 589
            G+W    WG P   ++P GA+++A F +D  E+ D + K     L G+ C S++ I
Sbjct: 83  HGRWNLIGWGLPPQPSSPTGAQVFAEFEADQQEDADERMKFLVEALNGVLCTSISHI 139


>Z72507-13|CAH60789.1|  515|Caenorhabditis elegans Hypothetical
           protein F17C11.7b protein.
          Length = 515

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
 Frame = +2

Query: 251 FNEELFIKPLPPAHLYTYFQFTTLVNDNLSSEH-TYLA-PRSLVEVLTRFQVDELHFTLT 424
           F+E+L + P+    L   F+F +    N  +E   YL  PR + E+L+R+ V +L  T+ 
Sbjct: 23  FDEKLTLSPVSKNELRVDFRFNSEREFNRKTESGDYLTFPRIIQELLSRYSVRKLTVTMA 82

Query: 425 EGQWRHNHWGYPVLDAAP-GAELYAWFSSD-VENVDTQWKKFSSTLAGL 565
            G+W    WG P   ++P GA+++A F +D  E+ D + K     L G+
Sbjct: 83  HGRWNLIGWGLPPQPSSPTGAQVFAEFEADQQEDADERMKFLVEALNGV 131


>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 308, isoform e protein.
          Length = 2702

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 26/102 (25%), Positives = 43/102 (42%)
 Frame = +2

Query: 257 EELFIKPLPPAHLYTYFQFTTLVNDNLSSEHTYLAPRSLVEVLTRFQVDELHFTLTEGQW 436
           + L +K    +H+ T      LV  + S  H  ++ +    ++ +       F ++E Q 
Sbjct: 136 DTLLLKSSSVSHVATEQMSEHLVMRSKSEHH--ISEKLQERLIEKESFSSQEF-ISENQG 192

Query: 437 RHNHWGYPVLDAAPGAELYAWFSSDVENVDTQWKKFSSTLAG 562
            H HW   V+D   G  L  W SS+ E      K+ +  LAG
Sbjct: 193 VHTHWD--VIDNN-GDALICWKSSETEQKSLDAKQVTEELAG 231


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 26/102 (25%), Positives = 43/102 (42%)
 Frame = +2

Query: 257  EELFIKPLPPAHLYTYFQFTTLVNDNLSSEHTYLAPRSLVEVLTRFQVDELHFTLTEGQW 436
            + L +K    +H+ T      LV  + S  H  ++ +    ++ +       F ++E Q 
Sbjct: 4982 DTLLLKSSSVSHVATEQMSEHLVMRSKSEHH--ISEKLQERLIEKESFSSQEF-ISENQG 5038

Query: 437  RHNHWGYPVLDAAPGAELYAWFSSDVENVDTQWKKFSSTLAG 562
             H HW   V+D   G  L  W SS+ E      K+ +  LAG
Sbjct: 5039 VHTHWD--VIDNN-GDALICWKSSETEQKSLDAKQVTEELAG 5077


>AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical
           protein Y102A5C.36 protein.
          Length = 213

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 26/93 (27%), Positives = 45/93 (48%)
 Frame = +2

Query: 191 NFLFFIAVFIETIFNANGDLFNEELFIKPLPPAHLYTYFQFTTLVNDNLSSEHTYLAPRS 370
           NFL+F    +ETIF + G      LF+  L   +++ +F F   +   LSSE ++++P  
Sbjct: 53  NFLYFSPNCVETIFVSLG----RNLFL-CLQRRYIHCFFHFLLKLTLYLSSEISHVSP-- 105

Query: 371 LVEVLTRFQVDELHFTLTEGQWRHNHWGYPVLD 469
                +R Q+    +T +   W+     YP+ D
Sbjct: 106 -----SRQQIIRKPWTTS---WKPTRINYPIKD 130


>AF036706-16|AAM97947.1|  139|Caenorhabditis elegans Hypothetical
           protein T07A9.12b protein.
          Length = 139

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 609 VIVLKSSIKFKDAQNSPARVELNFFH--CVSTF 517
           +I L+S ++FKD +    RV LN F   C++ F
Sbjct: 60  IIYLRSCVEFKDYRGPTVRVILNIFRLTCITLF 92


>AF036706-15|AAK39285.1|  145|Caenorhabditis elegans Hypothetical
           protein T07A9.12a protein.
          Length = 145

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 609 VIVLKSSIKFKDAQNSPARVELNFFH--CVSTF 517
           +I L+S ++FKD +    RV LN F   C++ F
Sbjct: 66  IIYLRSCVEFKDYRGPTVRVILNIFRLTCITLF 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,511,458
Number of Sequences: 27780
Number of extensions: 322948
Number of successful extensions: 734
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)