Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_C21
         (968 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    35   0.076
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    35   0.076
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    35   0.076
AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical ...    33   0.40 
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    28   8.7  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 35.1 bits (77), Expect = 0.076
 Identities = 22/83 (26%), Positives = 24/83 (28%)
 Frame = +2

Query: 647 PXSXSPXKKPXAPXFGXGXVXPPXGGXXSPXSGNPKXXXPXPXAQXKXPXCFSXPPXXXX 826
           P +  P   P  P    G   PP  G   P +G P    P P      P     PP    
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGP----PPPPPPGGLPPISGGPPPPPP 763

Query: 827 HXGXXXNXPXPPXXXXXXXXXPP 895
             G     P PP         PP
Sbjct: 764 PPGGCPPPPPPPPPGGFKGGPPP 786



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 25/83 (30%), Positives = 25/83 (30%)
 Frame = +2

Query: 611 PPPGEXXXXXFGPXSXSPXKKPXAPXFGXGXVXPPXGGXXSPXSGNPKXXXPXPXAQXKX 790
           PPPG        P    P   P  P  G     PP GG   P SG P    P P      
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLP--PITGGPPPPPPPGG-LPPISGGPPPPPPPPGGCPPP 771

Query: 791 PXCFSXPPXXXXHXGXXXNXPXP 859
           P     PP      G     P P
Sbjct: 772 P----PPPPPGGFKGGPPPPPPP 790


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 35.1 bits (77), Expect = 0.076
 Identities = 22/83 (26%), Positives = 24/83 (28%)
 Frame = +2

Query: 647 PXSXSPXKKPXAPXFGXGXVXPPXGGXXSPXSGNPKXXXPXPXAQXKXPXCFSXPPXXXX 826
           P +  P   P  P    G   PP  G   P +G P    P P      P     PP    
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGP----PPPPPPGGLPPISGGPPPPPP 763

Query: 827 HXGXXXNXPXPPXXXXXXXXXPP 895
             G     P PP         PP
Sbjct: 764 PPGGCPPPPPPPPPGGFKGGPPP 786



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 25/83 (30%), Positives = 25/83 (30%)
 Frame = +2

Query: 611 PPPGEXXXXXFGPXSXSPXKKPXAPXFGXGXVXPPXGGXXSPXSGNPKXXXPXPXAQXKX 790
           PPPG        P    P   P  P  G     PP GG   P SG P    P P      
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLP--PITGGPPPPPPPGG-LPPISGGPPPPPPPPGGCPPP 771

Query: 791 PXCFSXPPXXXXHXGXXXNXPXP 859
           P     PP      G     P P
Sbjct: 772 P----PPPPPGGFKGGPPPPPPP 790


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 35.1 bits (77), Expect = 0.076
 Identities = 22/83 (26%), Positives = 24/83 (28%)
 Frame = +2

Query: 647 PXSXSPXKKPXAPXFGXGXVXPPXGGXXSPXSGNPKXXXPXPXAQXKXPXCFSXPPXXXX 826
           P +  P   P  P    G   PP  G   P +G P    P P      P     PP    
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGP----PPPPPPGGLPPISGGPPPPPP 346

Query: 827 HXGXXXNXPXPPXXXXXXXXXPP 895
             G     P PP         PP
Sbjct: 347 PPGGCPPPPPPPPPGGFKGGPPP 369



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 25/83 (30%), Positives = 25/83 (30%)
 Frame = +2

Query: 611 PPPGEXXXXXFGPXSXSPXKKPXAPXFGXGXVXPPXGGXXSPXSGNPKXXXPXPXAQXKX 790
           PPPG        P    P   P  P  G     PP GG   P SG P    P P      
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLP--PITGGPPPPPPPGG-LPPISGGPPPPPPPPGGCPPP 354

Query: 791 PXCFSXPPXXXXHXGXXXNXPXP 859
           P     PP      G     P P
Sbjct: 355 P----PPPPPGGFKGGPPPPPPP 373


>AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical
           protein T22D1.2 protein.
          Length = 302

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 25/119 (21%), Positives = 30/119 (25%), Gaps = 3/119 (2%)
 Frame = +2

Query: 611 PPPGEXXXXXFGPXSXSPXKKPXAPXFGXGXVXPPXGGXXSPXSGN---PKXXXPXPXAQ 781
           PPP             +  ++P  P  G G   PP  G     SG     +   P P   
Sbjct: 75  PPPPTGEPQDLSAEEGNASRRPPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGT 134

Query: 782 XKXPXCFSXPPXXXXHXGXXXNXPXPPXXXXXXXXXPPXXXXXXXXXXXXXXXXPPXXP 958
              P   +  P      G     P PP         PP                PP  P
Sbjct: 135 GSPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSTEGNASRRPPPPP 193


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = +1

Query: 607 PPPPRGKXGXXFWPXFXFPXQKTXGPGXRXGKXXPPXGGXXXP 735
           PPP  G  G    P   F   +  GPG   G   PP GG   P
Sbjct: 380 PPPQSGPPGAFAPPPSAFGAPQ--GPGGPGGYGPPPPGGPGAP 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,539,949
Number of Sequences: 27780
Number of extensions: 217377
Number of successful extensions: 291
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2510937120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)