Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_C20
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.072
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   0.25 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.7  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 33/103 (32%), Positives = 34/103 (33%)
 Frame = -3

Query: 830 NLFLIRGGHPXRGXFWGFXGGGXXXXXPPXXGXFFGGXXPFXXPXEKKXXXGXXPPXGGG 651
           NLF  RG +   G F GF GG      PP     FGG   F          G     GGG
Sbjct: 178 NLFHHRGHNG--GGFGGFGGGSGG---PPPGPGGFGGFGGFGGEGHHHGGHGG---FGGG 229

Query: 650 PXXPPXGGGXTXPPPKKXGXXXFXXGXGXGPQKKXPXXXGGGG 522
           P     G G     P   G      G G G     P   GG G
Sbjct: 230 PGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -3

Query: 632 GGGXTXPPPKKXGXXXFXXGXGXGPQKKXPXXXGGGGXFFXG 507
           GGG   PPP   G   F    G G         GGG   F G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEG 235


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect(2) = 0.25
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 501 PPPPPPGXXKK 469
           PPPPPPG  KK
Sbjct: 25  PPPPPPGYVKK 35



 Score = 22.6 bits (46), Expect(2) = 0.25
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 510 GXXPPPPPP 484
           G  PPPPPP
Sbjct: 7   GNPPPPPPP 15


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = +1

Query: 562 PXPXPXXKXXXPXFLGGGXVXPPPXG-GXXGPPP 660
           P P P         +GG    PPP G    GPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,753,345
Number of Sequences: 5004
Number of extensions: 23375
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)