Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_C20
         (895 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            28   0.44 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    28   0.44 

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.9 bits (59), Expect = 0.44
 Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
 Frame = +3

Query: 627 PPXGGXXXSPPXXGXXPXXXL---FFXGXPKRXXTPKKXPXXXXXXPXGPPPXKXPKXPP 797
           PP G     PP     P   L   FF   P +   P   P      P   PP   P  PP
Sbjct: 535 PPGGAVLNIPPQFLPPPLNLLRAPFFPLNPAQLRFPAGFPNLPNAQPPPAPPPPPPMGPP 594



 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 766 PPPXXPQXSPLXGXP 810
           PPP  P  SPL G P
Sbjct: 588 PPPMGPPPSPLAGGP 602



 Score = 23.4 bits (48), Expect = 9.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 501 PPPPPPG 481
           PPPPPPG
Sbjct: 531 PPPPPPG 537


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 0.44
 Identities = 20/77 (25%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
 Frame = +1

Query: 595 PXFLGGGXVXPPPXGGXXGPPPXGGXXPXKXFFSXGXXKGXXPPKNXPXXGGF---XXXX 765
           P    G    PP   G   PP  G   P +     G  +    P+N    GG        
Sbjct: 238 PGMQPGMQPRPPSAQGMQRPPMMGQPPPIRPPNPMGGPRPQISPQNSNLSGGMPSGMVGP 297

Query: 766 PPPXXPQXSPLXGXPPR 816
           P P  P      G PP+
Sbjct: 298 PRPPMPMQGGAPGGPPQ 314



 Score = 25.4 bits (53), Expect = 2.3
 Identities = 18/65 (27%), Positives = 21/65 (32%)
 Frame = +1

Query: 628 PPXGGXXGPPPXGGXXPXKXFFSXGXXKGXXPPKNXPXXGGFXXXXPPPXXPQXSPLXGX 807
           PP  G   P P G   P +     G   G  P        G     P     Q  P+ G 
Sbjct: 211 PPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQP--------GMQPRPPSAQGMQRPPMMGQ 262

Query: 808 PPRIK 822
           PP I+
Sbjct: 263 PPPIR 267


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 520,218
Number of Sequences: 2352
Number of extensions: 9025
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 96334083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)