Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_C19
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.91 
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    29   1.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 18/77 (23%), Positives = 32/77 (41%)
 Frame = -3

Query: 301  VSRTGRFCLDSDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAVPQSPTPHLTFKPV 122
            + R  R  L ++ +RQ  +     +VT    V+   +   WL S      P P L++K  
Sbjct: 799  LGRLTRLWLKAEQERQHNYLKDGPYVTADEAVAIYTTFVHWLESRRFQPIPFPPLSYKHD 858

Query: 121  FPRIA*KYERARVKYNL 71
               +    ER +  Y++
Sbjct: 859  TKLLVLALERLKEAYSV 875


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -1

Query: 171 RTRYHNRPRHTSLSNRFSRGSRKSTNARESNTTYHHKR*RQNSNLKEFPIVS 16
           R  YH R + T  S+  S  S  STN++E N+ YH++    NS    F   S
Sbjct: 38  RQSYHQRTK-TPRSSYDSPSS--STNSKEHNSPYHYRVPSNNSTRASFGAAS 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,444,228
Number of Sequences: 5004
Number of extensions: 68909
Number of successful extensions: 194
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)