Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_C19
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0829 + 28025760-28025846,28026366-28026473,28026721-280267... 30 2.2
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 29 5.1
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 29 5.1
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563 29 5.1
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 29 5.1
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 29 6.7
04_03_0819 + 20018496-20019487,20019587-20019721,20019834-200199... 29 6.7
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 28 8.9
03_05_0938 - 28978696-28978809,28978942-28979028,28979124-289792... 28 8.9
>03_05_0829 +
28025760-28025846,28026366-28026473,28026721-28026752,
28026823-28026873,28027528-28027589,28027663-28027924,
28028634-28028899,28029138-28029232,28029772-28029948
Length = 379
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 289 PCVRQFSFVPWAR*VMPDRVVSQ*QCP-WLYKMAAIAALFGLLVIAFVSGQNVEIT 453
PC F FVPW P+ VSQ Q W++ A+AA + I V G+ +T
Sbjct: 199 PCSFIFLFVPWFLLEKPEMDVSQIQFNYWIFFFNAVAAFALNISIFLVIGRTGAVT 254
>07_03_1615 -
28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 295 RTGRFCLDSDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAV 161
R G C+ Q FT ++F+T ++SC L W+ AV
Sbjct: 67 RLGAGCVTCSSQSAFTIV-LVIFITASCLISCSHFLMSWMSIEAV 110
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/78 (23%), Positives = 33/78 (42%)
Frame = -3
Query: 301 VSRTGRFCLDSDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAVPQSPTPHLTFKPV 122
+ R R L ++ +RQ + +VT V+ + WL S P P L++K
Sbjct: 790 LGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHD 849
Query: 121 FPRIA*KYERARVKYNLS 68
+ ER + Y+++
Sbjct: 850 TKLLILALERLKESYSVA 867
>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
Length = 571
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 629 APHSPVVSPCPEYTTSPSWLPG 564
AP+SPV SP P + SPS+ PG
Sbjct: 207 APYSPVYSPYP-HPVSPSYTPG 227
>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/78 (23%), Positives = 33/78 (42%)
Frame = -3
Query: 301 VSRTGRFCLDSDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAVPQSPTPHLTFKPV 122
+ R R L ++ +RQ + +VT V+ + WL S P P L++K
Sbjct: 790 LGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHD 849
Query: 121 FPRIA*KYERARVKYNLS 68
+ ER + Y+++
Sbjct: 850 TKLLILALERLKESYSVA 867
>06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 578 KATSCTPDKDSQPENVARTSRTSGXDWNGNVTCVLPPQ 691
K + TPD ++ P N ++S + +GNV+ PPQ
Sbjct: 1040 KPSESTPDTETLPHNTPKSSISISEAADGNVSEEAPPQ 1077
>04_03_0819 +
20018496-20019487,20019587-20019721,20019834-20019978,
20020135-20020416,20020649-20020910,20021028-20021224,
20021315-20021425,20022341-20022392,20022442-20022584,
20023121-20023210,20023300-20023800,20024108-20024176,
20024866-20025011,20025475-20025530,20026140-20026286,
20027405-20027530,20027608-20027876,20028026-20028127
Length = 1274
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = -1
Query: 735 KQPSWCPVTLXC-----CWNCGGRTQVTLPFQSXPDVLDVRATF 619
K P PVT+ C CW+ ++ PF S P++L V F
Sbjct: 337 KVPQNLPVTIACHNKERCWSASRESRTAAPFGSYPNLLLVYPQF 380
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 629 APHSPVVSPCPEYT-TSPSWLPGISLY 552
+P SPV SP P Y+ TSPS+ P Y
Sbjct: 1552 SPSSPVYSPGPGYSPTSPSYSPASPSY 1578
>03_05_0938 -
28978696-28978809,28978942-28979028,28979124-28979256,
28979592-28979865,28980242-28980368,28980523-28980773,
28980854-28980935
Length = 355
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 681 CRHSSSNIXGSPGTMXAAXSPRAPGKTRXXISP 779
C + + G+P AA PRAPG R +P
Sbjct: 4 CSGAEEELHGAPAANPAAPPPRAPGPPRGPNAP 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,163,003
Number of Sequences: 37544
Number of extensions: 518319
Number of successful extensions: 1330
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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