Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_C19
(906 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC015409-1|AAH15409.1| 328|Homo sapiens COL9A1 protein protein. 33 1.4
AL160262-4|CAI42321.1| 921|Homo sapiens collagen type IX alpha ... 33 1.4
AL080275-4|CAI19591.1| 328|Homo sapiens collagen type IX alpha ... 33 1.4
AL080275-3|CAI19590.1| 921|Homo sapiens collagen type IX alpha ... 33 1.4
AF036130-1|AAC33527.1| 921|Homo sapiens collagen type IX alpha ... 33 1.4
BC126108-1|AAI26109.1| 957|Homo sapiens collagen, type XXI, alp... 32 3.3
BC045597-1|AAH45597.1| 480|Homo sapiens COL21A1 protein protein. 32 3.3
AL513530-3|CAH73912.1| 954|Homo sapiens collagen type XXI alpha... 32 3.3
AL513530-2|CAH73913.1| 957|Homo sapiens collagen type XXI alpha... 32 3.3
AL034452-2|CAI22396.1| 954|Homo sapiens collagen type XXI alpha... 32 3.3
AL034452-1|CAI22395.1| 957|Homo sapiens collagen type XXI alpha... 32 3.3
AL031782-4|CAI22497.1| 954|Homo sapiens collagen type XXI alpha... 32 3.3
AL031782-3|CAI22496.1| 957|Homo sapiens collagen type XXI alpha... 32 3.3
AF438327-1|AAL86699.1| 957|Homo sapiens alpha 1 type XXI collag... 32 3.3
AF414088-1|AAL02227.1| 957|Homo sapiens collagen XXI protein. 32 3.3
AF330693-1|AAL50033.1| 954|Homo sapiens alpha 1 chain-like coll... 32 3.3
AF103059-1|AAD16500.1| 117|Homo sapiens immunoglobulin heavy ch... 31 7.6
>BC015409-1|AAH15409.1| 328|Homo sapiens COL9A1 protein protein.
Length = 328
Score = 33.1 bits (72), Expect = 1.4
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 631 HIKNIRXRLERQCHLRPAATVPATSEGHRAP*XLLXXPGPPGKP 762
H +R R E CH PA P+ + R P PGPPG P
Sbjct: 241 HCDPLRPRRET-CHELPARITPSQTTDERGPPGEQGPPGPPGPP 283
>AL160262-4|CAI42321.1| 921|Homo sapiens collagen type IX alpha 1
protein.
Length = 921
Score = 33.1 bits (72), Expect = 1.4
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 631 HIKNIRXRLERQCHLRPAATVPATSEGHRAP*XLLXXPGPPGKP 762
H +R R E CH PA P+ + R P PGPPG P
Sbjct: 241 HCDPLRPRRET-CHELPARITPSQTTDERGPPGEQGPPGPPGPP 283
>AL080275-4|CAI19591.1| 328|Homo sapiens collagen type IX alpha 1
protein.
Length = 328
Score = 33.1 bits (72), Expect = 1.4
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 631 HIKNIRXRLERQCHLRPAATVPATSEGHRAP*XLLXXPGPPGKP 762
H +R R E CH PA P+ + R P PGPPG P
Sbjct: 241 HCDPLRPRRET-CHELPARITPSQTTDERGPPGEQGPPGPPGPP 283
>AL080275-3|CAI19590.1| 921|Homo sapiens collagen type IX alpha 1
protein.
Length = 921
Score = 33.1 bits (72), Expect = 1.4
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 631 HIKNIRXRLERQCHLRPAATVPATSEGHRAP*XLLXXPGPPGKP 762
H +R R E CH PA P+ + R P PGPPG P
Sbjct: 241 HCDPLRPRRET-CHELPARITPSQTTDERGPPGEQGPPGPPGPP 283
>AF036130-1|AAC33527.1| 921|Homo sapiens collagen type IX alpha I
chain, long form protein.
Length = 921
Score = 33.1 bits (72), Expect = 1.4
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 631 HIKNIRXRLERQCHLRPAATVPATSEGHRAP*XLLXXPGPPGKP 762
H +R R E CH PA P+ + R P PGPPG P
Sbjct: 241 HCDPLRPRRET-CHELPARITPSQTTDERGPPGEQGPPGPPGPP 283
>BC126108-1|AAI26109.1| 957|Homo sapiens collagen, type XXI, alpha
1 protein.
Length = 957
Score = 31.9 bits (69), Expect = 3.3
Identities = 20/71 (28%), Positives = 26/71 (36%)
Frame = +3
Query: 648 GKTGTAMSPASCRHSSSNIXGSPGTMXAAXSPRAPGKTRXXISPPXXSVXXTXDIFXGRS 827
G G A P RH + GSPG A SP APG+ P + +
Sbjct: 563 GLPGPAGEPG--RHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKG 620
Query: 828 AFVPNGXXGRQ 860
P G G++
Sbjct: 621 EIGPPGQQGKK 631
>BC045597-1|AAH45597.1| 480|Homo sapiens COL21A1 protein protein.
Length = 480
Score = 31.9 bits (69), Expect = 3.3
Identities = 20/71 (28%), Positives = 26/71 (36%)
Frame = +3
Query: 648 GKTGTAMSPASCRHSSSNIXGSPGTMXAAXSPRAPGKTRXXISPPXXSVXXTXDIFXGRS 827
G G A P RH + GSPG A SP APG+ P + +
Sbjct: 86 GLPGPAGEPG--RHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKG 143
Query: 828 AFVPNGXXGRQ 860
P G G++
Sbjct: 144 EIGPPGQQGKK 154
>AL513530-3|CAH73912.1| 954|Homo sapiens collagen type XXI alpha 1
protein.
Length = 954
Score = 31.9 bits (69), Expect = 3.3
Identities = 20/71 (28%), Positives = 26/71 (36%)
Frame = +3
Query: 648 GKTGTAMSPASCRHSSSNIXGSPGTMXAAXSPRAPGKTRXXISPPXXSVXXTXDIFXGRS 827
G G A P RH + GSPG A SP APG+ P + +
Sbjct: 560 GLPGPAGEPG--RHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKG 617
Query: 828 AFVPNGXXGRQ 860
P G G++
Sbjct: 618 EIGPPGQQGKK 628
>AL513530-2|CAH73913.1| 957|Homo sapiens collagen type XXI alpha 1
protein.
Length = 957
Score = 31.9 bits (69), Expect = 3.3
Identities = 20/71 (28%), Positives = 26/71 (36%)
Frame = +3
Query: 648 GKTGTAMSPASCRHSSSNIXGSPGTMXAAXSPRAPGKTRXXISPPXXSVXXTXDIFXGRS 827
G G A P RH + GSPG A SP APG+ P + +
Sbjct: 563 GLPGPAGEPG--RHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKG 620
Query: 828 AFVPNGXXGRQ 860
P G G++
Sbjct: 621 EIGPPGQQGKK 631
>AL034452-2|CAI22396.1| 954|Homo sapiens collagen type XXI alpha 1
protein.
Length = 954
Score = 31.9 bits (69), Expect = 3.3
Identities = 20/71 (28%), Positives = 26/71 (36%)
Frame = +3
Query: 648 GKTGTAMSPASCRHSSSNIXGSPGTMXAAXSPRAPGKTRXXISPPXXSVXXTXDIFXGRS 827
G G A P RH + GSPG A SP APG+ P + +
Sbjct: 560 GLPGPAGEPG--RHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKG 617
Query: 828 AFVPNGXXGRQ 860
P G G++
Sbjct: 618 EIGPPGQQGKK 628
>AL034452-1|CAI22395.1| 957|Homo sapiens collagen type XXI alpha 1
protein.
Length = 957
Score = 31.9 bits (69), Expect = 3.3
Identities = 20/71 (28%), Positives = 26/71 (36%)
Frame = +3
Query: 648 GKTGTAMSPASCRHSSSNIXGSPGTMXAAXSPRAPGKTRXXISPPXXSVXXTXDIFXGRS 827
G G A P RH + GSPG A SP APG+ P + +
Sbjct: 563 GLPGPAGEPG--RHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKG 620
Query: 828 AFVPNGXXGRQ 860
P G G++
Sbjct: 621 EIGPPGQQGKK 631
>AL031782-4|CAI22497.1| 954|Homo sapiens collagen type XXI alpha 1
protein.
Length = 954
Score = 31.9 bits (69), Expect = 3.3
Identities = 20/71 (28%), Positives = 26/71 (36%)
Frame = +3
Query: 648 GKTGTAMSPASCRHSSSNIXGSPGTMXAAXSPRAPGKTRXXISPPXXSVXXTXDIFXGRS 827
G G A P RH + GSPG A SP APG+ P + +
Sbjct: 560 GLPGPAGEPG--RHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKG 617
Query: 828 AFVPNGXXGRQ 860
P G G++
Sbjct: 618 EIGPPGQQGKK 628
>AL031782-3|CAI22496.1| 957|Homo sapiens collagen type XXI alpha 1
protein.
Length = 957
Score = 31.9 bits (69), Expect = 3.3
Identities = 20/71 (28%), Positives = 26/71 (36%)
Frame = +3
Query: 648 GKTGTAMSPASCRHSSSNIXGSPGTMXAAXSPRAPGKTRXXISPPXXSVXXTXDIFXGRS 827
G G A P RH + GSPG A SP APG+ P + +
Sbjct: 563 GLPGPAGEPG--RHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKG 620
Query: 828 AFVPNGXXGRQ 860
P G G++
Sbjct: 621 EIGPPGQQGKK 631
>AF438327-1|AAL86699.1| 957|Homo sapiens alpha 1 type XXI collagen
precursor protein.
Length = 957
Score = 31.9 bits (69), Expect = 3.3
Identities = 20/71 (28%), Positives = 26/71 (36%)
Frame = +3
Query: 648 GKTGTAMSPASCRHSSSNIXGSPGTMXAAXSPRAPGKTRXXISPPXXSVXXTXDIFXGRS 827
G G A P RH + GSPG A SP APG+ P + +
Sbjct: 563 GLPGPAGEPG--RHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKG 620
Query: 828 AFVPNGXXGRQ 860
P G G++
Sbjct: 621 EIGPPGQQGKK 631
>AF414088-1|AAL02227.1| 957|Homo sapiens collagen XXI protein.
Length = 957
Score = 31.9 bits (69), Expect = 3.3
Identities = 20/71 (28%), Positives = 26/71 (36%)
Frame = +3
Query: 648 GKTGTAMSPASCRHSSSNIXGSPGTMXAAXSPRAPGKTRXXISPPXXSVXXTXDIFXGRS 827
G G A P RH + GSPG A SP APG+ P + +
Sbjct: 563 GLPGPAGEPG--RHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKG 620
Query: 828 AFVPNGXXGRQ 860
P G G++
Sbjct: 621 EIGPPGQQGKK 631
>AF330693-1|AAL50033.1| 954|Homo sapiens alpha 1 chain-like
collagen COLA1L precursor protein.
Length = 954
Score = 31.9 bits (69), Expect = 3.3
Identities = 20/71 (28%), Positives = 26/71 (36%)
Frame = +3
Query: 648 GKTGTAMSPASCRHSSSNIXGSPGTMXAAXSPRAPGKTRXXISPPXXSVXXTXDIFXGRS 827
G G A P RH + GSPG A SP APG+ P + +
Sbjct: 560 GLPGPAGEPG--RHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKG 617
Query: 828 AFVPNGXXGRQ 860
P G G++
Sbjct: 618 EIGPPGQQGKK 628
>AF103059-1|AAD16500.1| 117|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 117
Score = 30.7 bits (66), Expect = 7.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -2
Query: 260 TAIHFYSSNSFCYTNVGSFMYFFSFFLVTVERGTTIAH 147
TA+++ + ++ Y N+G F Y+ LVTV +T AH
Sbjct: 80 TAVYYCARDNGYYDNIGPFDYWGQGTLVTVSSASTKAH 117
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,175,821
Number of Sequences: 237096
Number of extensions: 2824741
Number of successful extensions: 7957
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7933
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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