Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_C19
         (906 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M27813-1|AAA28532.1|  508|Drosophila melanogaster protein ( D.me...    36   0.076
BT029964-1|ABM92838.1|  416|Drosophila melanogaster IP17819p pro...    36   0.076
AY075516-1|AAL68324.1|  401|Drosophila melanogaster RE66907p pro...    36   0.076
AE014134-2926|AAF53665.2|  508|Drosophila melanogaster CG5803-PA...    36   0.076
AE014134-2925|AAN11002.1|  401|Drosophila melanogaster CG5803-PB...    36   0.076

>M27813-1|AAA28532.1|  508|Drosophila melanogaster protein (
           D.melanogaster fasciclinIII mRNA, complete cds. ).
          Length = 508

 Score = 35.9 bits (79), Expect = 0.076
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 442 VEITPIKAVRRIGDELIVLCKVPYQIDSCRM-IVGTTSY-RLIPG-NQEGDVVYSGQGLT 612
           V + P  A+   GD   +LC+    I+ CR+ I G      L P  ++     Y G GLT
Sbjct: 22  VNVEPNTALLNEGDRTELLCRYGRSINYCRIEIPGEQKVLNLSPEWSKTPGFTYFGAGLT 81

Query: 613 TGECGAHIKNIR 648
            G+CG  I+ ++
Sbjct: 82  AGQCGVSIERVK 93


>BT029964-1|ABM92838.1|  416|Drosophila melanogaster IP17819p
           protein.
          Length = 416

 Score = 35.9 bits (79), Expect = 0.076
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 442 VEITPIKAVRRIGDELIVLCKVPYQIDSCRM-IVGTTSY-RLIPG-NQEGDVVYSGQGLT 612
           V + P  A+   GD   +LC+    I+ CR+ I G      L P  ++     Y G GLT
Sbjct: 22  VNVEPNTALLNEGDRTELLCRYGRSINYCRIEIPGEQKVLNLSPEWSKTPGFTYFGAGLT 81

Query: 613 TGECGAHIKNIR 648
            G+CG  I+ ++
Sbjct: 82  AGQCGVSIERVK 93


>AY075516-1|AAL68324.1|  401|Drosophila melanogaster RE66907p
           protein.
          Length = 401

 Score = 35.9 bits (79), Expect = 0.076
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 442 VEITPIKAVRRIGDELIVLCKVPYQIDSCRM-IVGTTSY-RLIPG-NQEGDVVYSGQGLT 612
           V + P  A+   GD   +LC+    I+ CR+ I G      L P  ++     Y G GLT
Sbjct: 22  VNVEPNTALLNEGDRTELLCRYGRSINYCRIEIPGEQKVLNLSPEWSKTPGFTYFGAGLT 81

Query: 613 TGECGAHIKNIR 648
            G+CG  I+ ++
Sbjct: 82  AGQCGVSIERVK 93


>AE014134-2926|AAF53665.2|  508|Drosophila melanogaster CG5803-PA,
           isoform A protein.
          Length = 508

 Score = 35.9 bits (79), Expect = 0.076
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 442 VEITPIKAVRRIGDELIVLCKVPYQIDSCRM-IVGTTSY-RLIPG-NQEGDVVYSGQGLT 612
           V + P  A+   GD   +LC+    I+ CR+ I G      L P  ++     Y G GLT
Sbjct: 22  VNVEPNTALLNEGDRTELLCRYGRSINYCRIEIPGEQKVLNLSPEWSKTPGFTYFGAGLT 81

Query: 613 TGECGAHIKNIR 648
            G+CG  I+ ++
Sbjct: 82  AGQCGVSIERVK 93


>AE014134-2925|AAN11002.1|  401|Drosophila melanogaster CG5803-PB,
           isoform B protein.
          Length = 401

 Score = 35.9 bits (79), Expect = 0.076
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 442 VEITPIKAVRRIGDELIVLCKVPYQIDSCRM-IVGTTSY-RLIPG-NQEGDVVYSGQGLT 612
           V + P  A+   GD   +LC+    I+ CR+ I G      L P  ++     Y G GLT
Sbjct: 22  VNVEPNTALLNEGDRTELLCRYGRSINYCRIEIPGEQKVLNLSPEWSKTPGFTYFGAGLT 81

Query: 613 TGECGAHIKNIR 648
            G+CG  I+ ++
Sbjct: 82  AGQCGVSIERVK 93


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,075,911
Number of Sequences: 53049
Number of extensions: 883022
Number of successful extensions: 2699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2689
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4423507848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)