Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_C19
(906 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z11115-9|CAD30453.1| 889|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z11115-8|CAD30452.1| 888|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z11115-7|CAD30451.1| 899|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z11115-6|CAD30450.1| 894|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z11115-5|CAA77453.2| 883|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z11115-4|CAA77448.2| 905|Caenorhabditis elegans Hypothetical pr... 30 2.6
AF320904-1|AAG41437.1| 889|Caenorhabditis elegans UNC-32F vacuo... 30 2.6
AF320903-1|AAG41436.1| 888|Caenorhabditis elegans UNC-32E vacuo... 30 2.6
AF320902-1|AAG41435.1| 899|Caenorhabditis elegans UNC-32D vacuo... 30 2.6
AF320901-1|AAG41434.1| 894|Caenorhabditis elegans UNC-32C vacuo... 30 2.6
AF320900-1|AAG41433.1| 883|Caenorhabditis elegans UNC-32B neuro... 30 2.6
AF320899-1|AAG41432.1| 905|Caenorhabditis elegans UNC-32A vacuo... 30 2.6
AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear recep... 30 2.6
AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear horm... 30 2.6
U58729-3|AAM54204.1| 955|Caenorhabditis elegans Hypothetical pr... 29 3.5
U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protei... 29 3.5
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli... 28 8.0
>Z11115-9|CAD30453.1| 889|Caenorhabditis elegans Hypothetical
protein ZK637.8f protein.
Length = 889
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 271 SDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAV 161
SD+ ++ F PQ++F++ + + CI L WL AV
Sbjct: 586 SDLDIKYMFIPQMIFLSSIFIYLCIQILSKWLFFGAV 622
>Z11115-8|CAD30452.1| 888|Caenorhabditis elegans Hypothetical
protein ZK637.8e protein.
Length = 888
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 271 SDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAV 161
SD+ ++ F PQ++F++ + + CI L WL AV
Sbjct: 591 SDLDIKYMFIPQMIFLSSIFIYLCIQILSKWLFFGAV 627
>Z11115-7|CAD30451.1| 899|Caenorhabditis elegans Hypothetical
protein ZK637.8d protein.
Length = 899
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 271 SDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAV 161
SD+ ++ F PQ++F++ + + CI L WL AV
Sbjct: 602 SDLDIKYMFIPQMIFLSSIFIYLCIQILSKWLFFGAV 638
>Z11115-6|CAD30450.1| 894|Caenorhabditis elegans Hypothetical
protein ZK637.8c protein.
Length = 894
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 271 SDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAV 161
SD+ ++ F PQ++F++ + + CI L WL AV
Sbjct: 591 SDLDIKYMFIPQMIFLSSIFIYLCIQILSKWLFFGAV 627
>Z11115-5|CAA77453.2| 883|Caenorhabditis elegans Hypothetical
protein ZK637.8b protein.
Length = 883
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 271 SDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAV 161
SD+ ++ F PQ++F++ + + CI L WL AV
Sbjct: 586 SDLDIKYMFIPQMIFLSSIFIYLCIQILSKWLFFGAV 622
>Z11115-4|CAA77448.2| 905|Caenorhabditis elegans Hypothetical
protein ZK637.8a protein.
Length = 905
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 271 SDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAV 161
SD+ ++ F PQ++F++ + + CI L WL AV
Sbjct: 602 SDLDIKYMFIPQMIFLSSIFIYLCIQILSKWLFFGAV 638
>AF320904-1|AAG41437.1| 889|Caenorhabditis elegans UNC-32F vacuolar
proton pump 101kDa subunit variant protein.
Length = 889
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 271 SDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAV 161
SD+ ++ F PQ++F++ + + CI L WL AV
Sbjct: 586 SDLDIKYMFIPQMIFLSSIFIYLCIQILSKWLFFGAV 622
>AF320903-1|AAG41436.1| 888|Caenorhabditis elegans UNC-32E vacuolar
proton pump 101kDa subunit variant protein.
Length = 888
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 271 SDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAV 161
SD+ ++ F PQ++F++ + + CI L WL AV
Sbjct: 591 SDLDIKYMFIPQMIFLSSIFIYLCIQILSKWLFFGAV 627
>AF320902-1|AAG41435.1| 899|Caenorhabditis elegans UNC-32D vacuolar
proton pump 103kDa subunit variant protein.
Length = 899
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 271 SDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAV 161
SD+ ++ F PQ++F++ + + CI L WL AV
Sbjct: 602 SDLDIKYMFIPQMIFLSSIFIYLCIQILSKWLFFGAV 638
>AF320901-1|AAG41434.1| 894|Caenorhabditis elegans UNC-32C vacuolar
proton pump 102kDa subunit variant protein.
Length = 894
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 271 SDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAV 161
SD+ ++ F PQ++F++ + + CI L WL AV
Sbjct: 591 SDLDIKYMFIPQMIFLSSIFIYLCIQILSKWLFFGAV 627
>AF320900-1|AAG41433.1| 883|Caenorhabditis elegans UNC-32B neuronal
vacuolar protonpump 100 kDa subunit variant protein.
Length = 883
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 271 SDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAV 161
SD+ ++ F PQ++F++ + + CI L WL AV
Sbjct: 586 SDLDIKYMFIPQMIFLSSIFIYLCIQILSKWLFFGAV 622
>AF320899-1|AAG41432.1| 905|Caenorhabditis elegans UNC-32A vacuolar
proton pump 103kDa subunit variant protein.
Length = 905
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 271 SDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAV 161
SD+ ++ F PQ++F++ + + CI L WL AV
Sbjct: 602 SDLDIKYMFIPQMIFLSSIFIYLCIQILSKWLFFGAV 638
>AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear receptor
NHR-8 protein.
Length = 560
Score = 29.9 bits (64), Expect = 2.6
Identities = 24/105 (22%), Positives = 46/105 (43%)
Frame = -1
Query: 612 CESLSGVHDVAFLVTRYQPVRSGADDHSTGVYLIRHFAENDEFVADPTDSFDGGDLHILT 433
C+ G + + +T Y+P + A + + H +D F + T + + +++
Sbjct: 164 CKCQCGFYPITQRLTAYEPKDTTAVNSPQDISFSHHLHHSDSFYSSSTSTL--SPMSVIS 221
Query: 432 *HKGDHEQTEKGGNSGHFV*PRTLLLTNYTIGHHSTCPRNETELS 298
H+ + G N+ V T TNYT+ ++ P + TELS
Sbjct: 222 CAPSSHDSS--GYNTSQLV---TQSPTNYTVS-PASIPSSITELS 260
>AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform a protein.
Length = 560
Score = 29.9 bits (64), Expect = 2.6
Identities = 24/105 (22%), Positives = 46/105 (43%)
Frame = -1
Query: 612 CESLSGVHDVAFLVTRYQPVRSGADDHSTGVYLIRHFAENDEFVADPTDSFDGGDLHILT 433
C+ G + + +T Y+P + A + + H +D F + T + + +++
Sbjct: 164 CKCQCGFYPITQRLTAYEPKDTTAVNSPQDISFSHHLHHSDSFYSSSTSTL--SPMSVIS 221
Query: 432 *HKGDHEQTEKGGNSGHFV*PRTLLLTNYTIGHHSTCPRNETELS 298
H+ + G N+ V T TNYT+ ++ P + TELS
Sbjct: 222 CAPSSHDSS--GYNTSQLV---TQSPTNYTVS-PASIPSSITELS 260
>U58729-3|AAM54204.1| 955|Caenorhabditis elegans Hypothetical
protein F02G3.1c protein.
Length = 955
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +1
Query: 391 IAALFGLLVIAFVSGQNVEITPIKAV---RRIGDELIVLCKV 507
I +F LL++ +SG + ++P + RR GD +V+CKV
Sbjct: 32 IILIFFLLLLLILSGWTLSLSPTEERLQNRRSGDNFLVVCKV 73
>U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protein
175 protein.
Length = 287
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 625 GAHIKNIRXRLERQCHLRPAATVPATSEGHRAP*XLLXXPGPPGK 759
G +++N R QC R AA PA S G + L PGP G+
Sbjct: 78 GINLRNKRNSDSCQCESR-AAACPAGSPGEKGEPGLAGLPGPDGE 121
>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 8 protein.
Length = 2329
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/77 (22%), Positives = 32/77 (41%)
Frame = -3
Query: 301 VSRTGRFCLDSDIQRQFTFTPQIVFVTRMSVVSCIFSLFFWLRSNAVPQSPTPHLTFKPV 122
+ R R L S+ +RQ + +++ V+ + WL S P P L++K
Sbjct: 768 LGRLTRLYLKSEQERQHNYLKDGPYISAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHD 827
Query: 121 FPRIA*KYERARVKYNL 71
+ ER + Y++
Sbjct: 828 TKLLILALERLKESYSV 844
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,868,030
Number of Sequences: 27780
Number of extensions: 436579
Number of successful extensions: 1742
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1739
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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