Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_C19
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.7  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 357 LTNYTIGHHSTCPRNETELSHARVASASI 271
           + NYT+GHH       + L  +  AS+++
Sbjct: 166 MVNYTLGHHHQNGATPSSLVSSASASSAV 194


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 51  DASVYGDRLYLTRARSYFYAILGKTGL 131
           D+S+  D LY+    +  YA++  TGL
Sbjct: 42  DSSIRRDPLYIVLPITVIYAVIFVTGL 68


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 544 TTSYRLIPGNQEGDVVYSGQGLTTGECGAHIKN 642
           T   +L+  +Q+GD++YS +     +C   ++N
Sbjct: 136 TVPNKLLRISQDGDILYSMRLTIKAKCPMELRN 168


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 281 LPRF*YPTAIHFYSSNSFCY 222
           LP+  YPTA+ F+   SF +
Sbjct: 267 LPKVPYPTALDFFVFLSFAF 286


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +3

Query: 414 RDRLCVRSKCGDHPHQSCPSDRRRTHRSLQSAVSDRLLSNDRRHHFVQ 557
           ++R    S   DH HQ     R++  +++Q       L+  ++ H +Q
Sbjct: 118 QERFGYFSSLKDHQHQFAELGRKKLEQAIQQLQEQLQLNVIQQTHLLQ 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,554
Number of Sequences: 438
Number of extensions: 5266
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)