Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_C17
(882 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 217 4e-56
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 217 4e-56
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 217 4e-56
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 217 4e-56
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 215 2e-55
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 188 2e-47
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 36 0.26
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 36 0.26
Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7) prot... 30 9.7
L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot... 30 9.7
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein. 30 9.7
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 217 bits (530), Expect = 4e-56
Identities = 110/184 (59%), Positives = 131/184 (71%), Gaps = 2/184 (1%)
Frame = +3
Query: 69 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 248
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 249 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 428
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 429 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPS 602
LTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR-G 179
Query: 603 RRAN 614
RRA+
Sbjct: 180 RRAS 183
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 217 bits (530), Expect = 4e-56
Identities = 110/184 (59%), Positives = 131/184 (71%), Gaps = 2/184 (1%)
Frame = +3
Query: 69 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 248
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 249 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 428
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 429 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPS 602
LTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR-G 179
Query: 603 RRAN 614
RRA+
Sbjct: 180 RRAS 183
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 217 bits (530), Expect = 4e-56
Identities = 110/184 (59%), Positives = 131/184 (71%), Gaps = 2/184 (1%)
Frame = +3
Query: 69 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 248
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 249 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 428
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 429 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPS 602
LTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR-G 179
Query: 603 RRAN 614
RRA+
Sbjct: 180 RRAS 183
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 217 bits (530), Expect = 4e-56
Identities = 110/184 (59%), Positives = 131/184 (71%), Gaps = 2/184 (1%)
Frame = +3
Query: 69 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 248
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 249 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 428
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 429 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPS 602
LTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR-G 179
Query: 603 RRAN 614
RRA+
Sbjct: 180 RRAS 183
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 215 bits (525), Expect = 2e-55
Identities = 109/184 (59%), Positives = 130/184 (70%), Gaps = 2/184 (1%)
Frame = +3
Query: 69 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 248
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 249 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 428
+ +SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LCLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 429 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPS 602
LTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR-G 179
Query: 603 RRAN 614
RRA+
Sbjct: 180 RRAS 183
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 188 bits (458), Expect = 2e-47
Identities = 93/146 (63%), Positives = 113/146 (77%), Gaps = 2/146 (1%)
Frame = +3
Query: 183 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 362
TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+
Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKL 75
Query: 363 TVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGA 542
V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE RHFG APG
Sbjct: 76 KVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGT 135
Query: 543 PRSHTKPYVRTKGH--EKARPSRRAN 614
P SHTKPYVR+KG E+AR RRA+
Sbjct: 136 PHSHTKPYVRSKGRKFERAR-GRRAS 160
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 35.5 bits (78), Expect = 0.26
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Frame = +2
Query: 305 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF-----*SAGSSCSDWQ 469
CR SG S R CS +S T CW + F S+G+S +
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSFTSCSCWSSGTSSTPCS 89
Query: 470 EDSTGTRSAKC----S*GSASLWPCSRSTALSH*TLCSHQGT 583
S+GT S C S S++ W C S S +C GT
Sbjct: 90 CRSSGTSSTSCSCWSSGTSSTSWSCKSSGTSSTCYMCLSSGT 131
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 35.5 bits (78), Expect = 0.26
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Frame = +2
Query: 305 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF-----*SAGSSCSDWQ 469
CR SG S R CS +S T CW + F S+G+S +
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSFTSCSCWSSGTSSTPCS 89
Query: 470 EDSTGTRSAKC----S*GSASLWPCSRSTALSH*TLCSHQGT 583
S+GT S C S S++ W C S S +C GT
Sbjct: 90 CRSSGTSSTSCSCWSSGTSSTSWSCKSSGTSSTCYMCLSSGT 131
>Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7)
protein.
Length = 180
Score = 30.3 bits (65), Expect = 9.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 395 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 273
+F N+KSS +R + C H Q SWLL+V
Sbjct: 138 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 178
>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
protein.
Length = 3144
Score = 30.3 bits (65), Expect = 9.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 395 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 273
+F N+KSS +R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
Length = 3144
Score = 30.3 bits (65), Expect = 9.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 395 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 273
+F N+KSS +R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,654,578
Number of Sequences: 237096
Number of extensions: 2342069
Number of successful extensions: 5369
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5367
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -