Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_C16
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118... 33 0.23
04_03_0489 + 16503325-16503747,16503916-16503978 32 0.70
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 31 0.93
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 29 3.8
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 29 3.8
04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844... 29 3.8
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 29 3.8
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993... 29 5.0
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 29 5.0
04_03_0737 - 19152942-19154930 29 6.6
02_02_0580 + 11757667-11758258,11758419-11758572,11758682-117587... 29 6.6
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 29 6.6
12_02_1275 - 27482784-27483272 28 8.7
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 28 8.7
06_03_0685 - 23499779-23500204 28 8.7
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 28 8.7
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 28 8.7
03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,855... 28 8.7
>06_03_0270 +
19009412-19009888,19009936-19011048,19011810-19011899,
19011928-19012027,19012135-19012333,19012559-19012679
Length = 699
Score = 33.5 bits (73), Expect = 0.23
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +1
Query: 211 TMEMVWTPSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAH 390
T E + +R RS R +P + R P++S S + APG A
Sbjct: 54 TAEQILREARSGRSPRSVPPSRRS-PTPSSSPSTASAAARSSRTPSAAPG-----GTSAR 107
Query: 391 GSAPPGGVTGRGCEP-RYPGHPQP 459
GS+ PGG +GRG P R P P
Sbjct: 108 GSSTPGGRSGRGTSPARAPSTSAP 131
>04_03_0489 + 16503325-16503747,16503916-16503978
Length = 161
Score = 31.9 bits (69), Expect = 0.70
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 292 PAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAH-GSAPPGGVTGRGCEPRY 441
PAA+A L RLRTP+ + C G P V H G+ P + RY
Sbjct: 49 PAAAACLRRLRTPATAACLRRAGNPRPPPVSPHKGAGRPAAAAPPAIDSRY 99
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 31.5 bits (68), Expect = 0.93
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 215 WKWCGLRRDQTGREG 259
W WCGLRR + GR G
Sbjct: 65 WMWCGLRRSKAGRRG 79
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 189 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLG 353
SSS S+Y N +G +T +++ SG +S S +S+ D E L LG
Sbjct: 781 SSSSSRYSNSSGTIFQKTSVQKRLSSGSSSSSKNKRSTAVVMSSPDCELDLLLLG 835
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = -1
Query: 427 SPARSPLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAE---RLLPGALRDAPSPE 263
S +RSPLR RE+G +R P+PRHS S +E R + RL G RD P+
Sbjct: 479 SRSRSPLRY---RERGG---YRRPSPRHSRSRSPAEHQRRDVRNRLRSG--RDGGGPD 528
>04_04_0407 -
24983491-24983575,24983655-24984015,24984367-24984406,
24984466-24984468
Length = 162
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 453 GVAGVXGLAAPPGHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRER 286
G A L A SG + ++ IRT+ RP T + +R PK +S R +
Sbjct: 21 GDAKAQALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNK 76
>02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -2
Query: 420 PGHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSAC 298
P P R RA S+D R T + RP T R P P AC
Sbjct: 1019 PSRPRRR-RAPSQDWRYTPDVPRPRTRGRRRGPSPAIQKAC 1058
>03_06_0034 +
31197846-31198417,31198562-31198987,31199074-31199386,
31199510-31199560
Length = 453
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 310 AERLLPGALRDAPSPE*TFSTCLVSTESTPF 218
++RL+ ALR PSP F++ L +TPF
Sbjct: 39 SQRLVYAALRSLPSPRALFASLLSQLSATPF 69
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -3
Query: 425 PRPVTPPGGAEP*AGTSGPPQRPGAQA--QRETLGVRSRQS*ALAAGSAQRRPV 270
P PV PPG A P A P + GA+A T ++ A A + + PV
Sbjct: 205 PIPVAPPGAAVPPAQPQPQPPQAGAEAVTTESTEATQAANPPATTASNPHQAPV 258
>04_03_0737 - 19152942-19154930
Length = 662
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 431 SQPRPVTPPGGAEP*AGTSGPPQ-RPGAQAQRETLG 327
SQP P PP AEP GP + R GA E LG
Sbjct: 65 SQPPPPQPPQAAEPLQRRWGPTERRKGADILVEALG 100
>02_02_0580 +
11757667-11758258,11758419-11758572,11758682-11758756,
11758836-11758980,11759222-11759287,11759347-11759500,
11761506-11761624
Length = 434
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Frame = -2
Query: 432 LAAPPGH--PSGRCRAVSRDIRTTTE--ARRPGTARNTRRPKPTELSACCRERSETPRHR 265
L APP H PS A ++ T A G R++ P P +LS C +
Sbjct: 19 LPAPPYHHSPSAAAAAAVEEVATPPRKSAAGAGAQRSSPMPSPLQLSGCSLQELLLMSPP 78
Query: 264 NKPSRPVWSR 235
+R WSR
Sbjct: 79 PGSARRNWSR 88
>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
Length = 152
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 408 SGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRER 286
SG + S+ IRT+ RP T + R PK +SA R +
Sbjct: 26 SGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNK 66
>12_02_1275 - 27482784-27483272
Length = 162
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 212 QWKWCGLRRDQTGREG 259
+W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -1
Query: 412 PLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERL 299
P + S +GH +HHR + A E DR + L
Sbjct: 44 PFCMLTSSSRGHAEHHRNGGGGGEHRREAGEGDRPKAL 81
>06_03_0685 - 23499779-23500204
Length = 141
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 232 PSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAP 357
P R R RR+ P GR+ LP ++CR R P R P
Sbjct: 42 PPRGGRIRRWPPRRGRIRGLPPLGGRICR-RPPRGGRIHGLP 82
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 352 APGLCGGPDVPAHGSAPPGGVTGRG-CEPRYPGHPQPXRXS 471
A G GGP +G+ GG+ G+G P P+P + S
Sbjct: 53 AAGQYGGPYASVYGTQQVGGLGGKGPASSSIPNLPEPSKFS 93
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = -2
Query: 426 APPGHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPT-ELSACCRERSETPRHRNKPSR 250
+P H R IR + + P R+ R P + + R RS PR R P R
Sbjct: 296 SPIRHGGTPSRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPIRRRSPLPRRRLTPPR 355
Query: 249 PVWS 238
+WS
Sbjct: 356 RMWS 359
>03_02_0445 -
8551912-8552047,8552729-8552896,8553785-8554068,
8554143-8555386,8556901-8556967,8557059-8557150,
8557269-8557480,8558541-8558623,8559092-8559122,
8559770-8559951,8560557-8560616,8561092-8561289,
8561485-8561539,8562740-8562855,8563012-8563176,
8563310-8563483,8564134-8564333,8564778-8564882,
8565063-8565126,8566452-8566718
Length = 1300
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = +1
Query: 298 ASAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPPGGVTGRGCEPRYPGHPQPXRXSRX 477
ASA RLR S+ +W P GG A G+ P G G + +P R S
Sbjct: 28 ASADGNRLRRCVQSKLSWGPPKAGGGGGEAGGAGLPPLAAGDGTPEKVKKRGRP-RKSEA 86
Query: 478 AKCPA 492
K P+
Sbjct: 87 GKKPS 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,322,240
Number of Sequences: 37544
Number of extensions: 337386
Number of successful extensions: 1589
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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