Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_C16
(886 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 33 0.36
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 32 0.47
U80838-2|AAL02517.1| 297|Caenorhabditis elegans Abnormal cell l... 32 0.47
U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell l... 32 0.47
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 32 0.63
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 31 1.4
Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical p... 30 1.9
U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protei... 30 1.9
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 30 1.9
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z72509-5|CAA96649.1| 294|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.3
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 29 4.4
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 4.4
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 5.8
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 5.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.8
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 5.8
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 5.8
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 5.8
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 5.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.8
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 28 7.7
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 28 7.7
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 28 7.7
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 32.7 bits (71), Expect = 0.36
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 313 CRLRTPSVSR-CAWAPGLCGGPDVPAHGSAPPGGVTGRGCEPRYPGHPQP 459
C +TP + C P GPD PA G A P G G P PG P P
Sbjct: 143 CEAKTPPPCKPCPAGPPGPPGPDGPA-GPAGPDGEAGSPAAPSPPGPPGP 191
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 32.3 bits (70), Expect = 0.47
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 313 CRLRTPSVSR-CAWAPGLCGGPDVPAHGSAPPGGVTGRGCEPRYPGHPQP 459
C +TP + C P GPD PA G A P G G P PG P P
Sbjct: 144 CEAKTPPPCQPCPAGPPGPPGPDGPA-GPAGPDGEAGSPAAPSPPGPPGP 192
>U80838-2|AAL02517.1| 297|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform a protein.
Length = 297
Score = 32.3 bits (70), Expect = 0.47
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 425 PRPVTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS 309
PR T GGA P +GT+ PP P + L +R Q+
Sbjct: 259 PRGATSTGGASPTSGTNSPPVFPKTSSSSSLLMLRDSQN 297
>U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform b protein.
Length = 597
Score = 32.3 bits (70), Expect = 0.47
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 425 PRPVTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS 309
PR T GGA P +GT+ PP P + L +R Q+
Sbjct: 559 PRGATSTGGASPTSGTNSPPVFPKTSSSSSLLMLRDSQN 597
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 31.9 bits (69), Expect = 0.63
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +1
Query: 355 PGLCGGPDVPAHGSAPPGGVTGRGCEPRYPGHPQPXRXSRXAKCP 489
PG G D+P APPG G P + HP P R R + P
Sbjct: 71 PGPQGPSDLPGPSGAPPGPPHPSG--PPHRPHPHPSRRPRPTRLP 113
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3
Query: 428 QPRPVTPPGGAEP*AGTSGPPQRPGAQAQ 342
+P + P G A P G SGPP RPGA Q
Sbjct: 198 EPGALLPGGDAPP--GPSGPPGRPGAPGQ 224
>Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical
protein K10C8.3b protein.
Length = 141
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -2
Query: 396 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 220
R S+ ++ + +RP + R ++ P P R RS + + K + V P+H
Sbjct: 17 RKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVRNRSGSSSKKEKKNSLVNPNLQPNH 75
>U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protein
58 protein.
Length = 305
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 355 PGLCGGPDVPAHGSAPP-GGVTGRGCEPRYPGHP 453
PG G P VP AP G+ GR P YPG P
Sbjct: 169 PGPRGPPGVPGITGAPGLDGIPGRHGTPGYPGEP 202
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Frame = +1
Query: 352 APGLCGGPDVPAHGSAP----PGGVTGRGCEPRYPGHP 453
APG G P + G P P G TG P PGHP
Sbjct: 157 APGNAGAPGQDSFGGGPGPAGPTGPTGDAGAPGQPGHP 194
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +1
Query: 352 APGLCGGPDVPAHGSAPPGGVTGR--GCEPRYPGHP 453
APG G P G+ P G G G P++PGHP
Sbjct: 439 APGGSGAPPPGPPGAYPGNGAPGGPPGGPPQFPGHP 474
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 431 SQPRPVTPPGGAEP*AGTSGPPQRPGA 351
+QP P PPG A P G G P +PGA
Sbjct: 262 AQPGPAGPPGDAGP-DGAPGNPGQPGA 287
>Z72509-5|CAA96649.1| 294|Caenorhabditis elegans Hypothetical
protein F32G8.5 protein.
Length = 294
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 301 SAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPPGGVTGRGCEPRYPGHP 453
+AQ+ TPS ++C P GPD G + P G+ GR E G+P
Sbjct: 125 NAQIDTYATPSCTQCTPGPPGAPGPD----GVSGPVGINGRPGENGADGNP 171
>Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical
protein C01F6.5 protein.
Length = 223
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -3
Query: 383 GTSGPPQRPGAQAQRETLGVRS 318
GT+GP +RP AQ +R++ G+R+
Sbjct: 38 GTAGPSRRPTAQPRRQSGGIRT 59
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 425 PRPVTPPGGAEP*AGTSGPPQRPGA 351
P P PP G+ P AG+ PP P A
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAA 261
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 425 PRPVTPPGGAEP*AGTSGPPQRPGA 351
P P PP G+ P AG+ PP P A
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAA 282
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 425 PRPVTPPGGAEP*AGTSGPPQRPGA 351
P P PP G+ P AG+ PP P A
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAA 267
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 29.1 bits (62), Expect = 4.4
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Frame = +1
Query: 238 RPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAPGLCGG---PDVPAH--GSAP 402
+P R P TGR C P + APG G P PA G P
Sbjct: 114 QPGSGARINPATGR-----PGFCITCPAGAPGPAGPPGAPGPKGNNGQPGAPAQSGGRGP 168
Query: 403 PG--GVTGRGCEPRYPGHP 453
PG G G P PGHP
Sbjct: 169 PGPRGPAGDAGSPGQPGHP 187
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 29.1 bits (62), Expect = 4.4
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Frame = +1
Query: 238 RPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAPGLCGG---PDVPAH--GSAP 402
+P R P TGR C P + APG G P PA G P
Sbjct: 114 QPGSGARINPATGR-----PGFCITCPAGAPGPAGPPGAPGPKGNNGQPGAPAQSGGRGP 168
Query: 403 PG--GVTGRGCEPRYPGHP 453
PG G G P PGHP
Sbjct: 169 PGPRGPAGDAGSPGQPGHP 187
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 425 PRPVTPPG--GAEP*AGTSGPPQRPGAQAQRETL 330
P P P G GA G +G P +PGA AQ E++
Sbjct: 185 PGPAGPKGASGAPGNPGQAGAPGQPGADAQSESI 218
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -3
Query: 431 SQP-RPVTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*ALAAGSAQRRPVTG 264
+QP P+TPP G +G P PG Q G + S A A G A + +G
Sbjct: 139 AQPCEPITPPPCKPCPQGPAGAPGAPGPQGDAGAPGAPGQGSGAGAPGPAGPKGASG 195
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 431 SQPRPVTPPGGAEP*AGTSGPPQRPGAQAQ 342
S P P PPG A P AG G P PG +
Sbjct: 180 SGPGPAGPPGPAGP-AGNDGAPGAPGGPGE 208
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 431 SQPRPVTPPGGAEP*AGTSGPPQRPGAQAQ 342
S P P PPG A P G G P +PG Q
Sbjct: 195 SGPGPAGPPGPAGP-PGNDGQPGQPGGPGQ 223
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Frame = -3
Query: 425 PRPVTPPG-----GAEP*AGTSGPPQRPGAQAQR 339
P P PPG G++ GT+GPP PG + ++
Sbjct: 261 PGPKGPPGPAGQPGSDGNPGTAGPPGNPGGEGEK 294
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 431 SQPRPVTPPGGAEP*AGTSGPPQRPGAQAQ 342
S P P PPG A P AG G P PG +
Sbjct: 180 SGPGPAGPPGPAGP-AGNDGAPGAPGGPGE 208
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 425 PRPVTPPGGAEP*AGTSGPPQRPG 354
P P PPGG P G PP PG
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPG 749
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 425 PRPVTPPGGAEP*AGTSGPPQRPG 354
P P PPGG P G PP PG
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPG 749
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 431 SQPRPVTPPGGAEP*AGTSGPPQRPGAQAQ 342
S P P PPG A P AG G P PG +
Sbjct: 180 SGPGPAGPPGPAGP-AGNDGAPGAPGGPGE 208
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 431 SQPRPVTPPGGAEP*AGTSGPPQRPGAQAQ 342
S P P PPG A P AG G P PG +
Sbjct: 180 SGPGPAGPPGPAGP-AGNDGAPGAPGGPGE 208
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 367 GGPDVPAHGSAPPGGVTGRGCEPRYPGHPQP 459
GGP P PPGG + P Y P P
Sbjct: 691 GGPPPPGQPYGPPGGYPPQQQRPPYQAQPYP 721
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 367 GGPDVPAHGSAPPGGVTGRGCEPRYPGHPQP 459
GGP P PPGG + P Y P P
Sbjct: 691 GGPPPPGQPYGPPGGYPPQQQRPPYQAQPYP 721
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 425 PRPVTPPGGAEP*AGTSGPPQRPG 354
P P PPGG P G PP PG
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPG 332
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1010.7 protein.
Length = 298
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Frame = +1
Query: 352 APGLCGGPDVPAHGSAPPG---GVTGRGCEPRYPGHPQP 459
APG G P P PP +T C P PG P P
Sbjct: 116 APGRPGAPGAPGFPGRPPAVCEEITEPPCTPCPPGEPGP 154
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Frame = -3
Query: 428 QPRPVTPPG----GAEP*AGTSGPPQRPGAQAQRETLG 327
+P P PPG EP G+ G P RPG R G
Sbjct: 187 KPGPAGPPGENGRNGEPQPGSPGEPGRPGQPGSRGPAG 224
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = -3
Query: 428 QPRPVTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*ALAAGSAQRRPVTGINLL 252
QP+ +TP G+ G+ GPP P R +Q AA SA P+ +NLL
Sbjct: 431 QPQQITPQPGSLGPMGSLGPPTAPPGSQPMNPQQQRIQQQ-QQAAPSASNSPLL-VNLL 487
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -1
Query: 379 HQDHHRGPAPRHSEKHSASEA-DRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 215
+ HH+ P P H H + + E++ ++ DAP T T LV +S P
Sbjct: 220 YSQHHQSPPPHHHHHHPMPKIHENPEQVASPSIEDAPE---TKPTHLVEPQSPKSP 272
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Frame = -3
Query: 428 QPRPVTPPG----GAEP*AGTSGPPQRPGAQAQRETLG 327
+P P PPG EP G G P +PG QR G
Sbjct: 189 KPGPAGPPGENGNNGEPQPGAPGEPGQPGQPGQRGPAG 226
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,815,842
Number of Sequences: 27780
Number of extensions: 248585
Number of successful extensions: 1636
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1621
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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