Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_C15
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z34976-1|CAA84428.1|  681|Caenorhabditis elegans Cog2 protein pr...    32   0.48 
U61947-9|AAB03139.2|  681|Caenorhabditis elegans Conserved oligo...    32   0.48 
Z81513-10|CAB04183.1|  247|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z81513-11|CAB04184.2|  254|Caenorhabditis elegans Hypothetical p...    28   7.8  
U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily ass...    28   7.8  

>Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical
           protein D2030.6 protein.
          Length = 824

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +2

Query: 623 PWNLLANYFTVETTPK-WGLYQYHVDISPXXRXALEVRKALM--RVPXKHSGGYFFDGXV 793
           P    AN+  +E T   + +YQYHV+  P         K L    V  +    + FDG +
Sbjct: 49  PQKCFANFIPIEMTQSDYSIYQYHVEFEPTVDSKANREKMLRDNNVTDEIGHHFVFDGMI 108

Query: 794 LY 799
           LY
Sbjct: 109 LY 110


>Z34976-1|CAA84428.1|  681|Caenorhabditis elegans Cog2 protein
           protein.
          Length = 681

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 775 ISSRVFTGNTHQCLSDFQCXSXSXRNIDVILIQAPFGSC 659
           ++ R  TGN HQ + DF   S   +  D+ +  APFG C
Sbjct: 455 VTLRSDTGNLHQLVFDFALESIWGKFHDITVDTAPFGQC 493


>U61947-9|AAB03139.2|  681|Caenorhabditis elegans Conserved
           oligomeric golgi (cog)component protein 2 protein.
          Length = 681

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 775 ISSRVFTGNTHQCLSDFQCXSXSXRNIDVILIQAPFGSC 659
           ++ R  TGN HQ + DF   S   +  D+ +  APFG C
Sbjct: 455 VTLRSDTGNLHQLVFDFALESIWGKFHDITVDTAPFGQC 493


>Z81513-10|CAB04183.1|  247|Caenorhabditis elegans Hypothetical
           protein F26D2.13 protein.
          Length = 247

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 305 TSTSIWLGTTIQCSSSKSWCPDTNSTSGSRLTPCY---SHYT*TSRRYRCATT 454
           +STS  + +T   SS  S+ PD++S+  S     +   + YT   RR  CATT
Sbjct: 191 SSTSTLISSTAISSSCTSYIPDSSSSCASWAANGFCTNNFYTIAGRRAVCATT 243


>Z81513-11|CAB04184.2|  254|Caenorhabditis elegans Hypothetical
           protein F26D2.14 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 305 TSTSIWLGTTIQCSSSKSWCPDTNSTSGSRLTPCY---SHYT*TSRRYRCATT 454
           TS  I   TT   S+  S+ PD++S+  +     +   +HYT   R+  CATT
Sbjct: 198 TSARISSSTTSITSTCSSYNPDSSSSCAAWAANGFCTNTHYTVARRKATCATT 250


>U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 292 protein.
          Length = 722

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +2

Query: 671 WGLYQYHVDISPXXRXALEVRKALMRVP--XKHSGGYF-FDGXVLY 799
           + +YQYHV+  P    +   R+ ++R P      G +F FDG +LY
Sbjct: 6   YSIYQYHVEFEPTV-DSKATRENMLRQPSVTVEIGKHFVFDGMILY 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,807,846
Number of Sequences: 27780
Number of extensions: 330997
Number of successful extensions: 954
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)