Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_C15
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          24   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   8.6  

>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 647 NSWQADSRGSTRSTFLRCYSFWTCA--QDGNSFRKDSSTPSSR 525
           NS ++ SR   R++   C+S +  +  +DGNS+R D     SR
Sbjct: 215 NSLRSRSRSFQRTS--SCHSRYEDSRHEDGNSYRNDGERSCSR 255


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
 Frame = -1

Query: 499 SPPPDEWGPSSN--FCM 455
           SPPP++W P     FC+
Sbjct: 415 SPPPEDWKPLDKCYFCL 431



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 531 VESHGQLRMMHHHLQMNGV 475
           ++ H  L+  HHHLQ   V
Sbjct: 138 LQRHHHLQNHHHHLQSTAV 156



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -2

Query: 570 RWK*FQEGLFHPLVESHGQLRMMHHHL 490
           RWK +Q+ L+     S       HH L
Sbjct: 45  RWKQYQDTLYSGTRSSESLTAQAHHRL 71


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
 Frame = -1

Query: 460 CMRCCTSISPGCSCVVGVTR-----CEARPACAVG 371
           C++ C   +PGC C +G  R     C  R  C  G
Sbjct: 63  CIKIC---APGCVCRLGYLRNKKKVCVPRSKCLPG 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,285
Number of Sequences: 438
Number of extensions: 4002
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)