Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_C14
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0634 + 21416205-21416954                                         29   3.8  
05_04_0142 - 18372751-18373338                                         29   5.0  
03_06_0149 - 31987183-31987630,31987813-31987874                       27   6.4  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.7  
06_03_0218 + 18219956-18220555                                         28   8.7  
03_04_0061 - 16949038-16950006                                         28   8.7  

>12_02_0634 + 21416205-21416954
          Length = 249

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 25/64 (39%), Positives = 29/64 (45%)
 Frame = -1

Query: 725 RKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRGFATSDLSVDFCDARQGG 546
           R R   RR  GG  +G+R+GR      GA   KR       RG   S      CDA +GG
Sbjct: 119 RGRGGRRRRSGGDATGRRRGR----VSGAFPAKRRAD----RGRGGS------CDAGRGG 164

Query: 545 GAYG 534
           GA G
Sbjct: 165 GAAG 168


>05_04_0142 - 18372751-18373338
          Length = 195

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 719 RHASRREKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRG 597
           R     E+GG   G++QGR R+A   A R +RL +  +C G
Sbjct: 59  RRVEEEEQGGGGGGRKQGRRRKAVARAIR-ERLPAAVACWG 98


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 26.6 bits (56), Expect(2) = 6.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 716 HASRREKGGQVSGKRQGRNRRAHEGASRG 630
           H   R +   +  +R+GR R AHEG   G
Sbjct: 81  HGLERLQEAGIEAERRGRRRNAHEGIKIG 109



 Score = 20.6 bits (41), Expect(2) = 6.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 812 GRXERGXVHTAXLGANDLH 756
           GR ERG V  A   A D H
Sbjct: 24  GREERGDVAAAGEDAADAH 42


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 354 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 509
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 303 NESAN---ARGEAVCVLGALPLPRSLTRCAR 386
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 710 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 615
           +RRE+  + +G  KR+GR R    G  RGKR  S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 605 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 721
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,948,021
Number of Sequences: 37544
Number of extensions: 466459
Number of successful extensions: 1405
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)