Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_C11
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 143 3e-35
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 75 1e-14
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 70 5e-13
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 30 0.49
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 30 0.49
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 28 1.5
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 28 2.0
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 27 2.6
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 27 3.4
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 6.0
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 6.0
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 26 7.9
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 143 bits (346), Expect = 3e-35
Identities = 75/155 (48%), Positives = 93/155 (60%)
Frame = +1
Query: 298 YMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLI 477
Y WG LGIA VA ++GAA GI G SI+GG VKAPRIKTKNLIS+IFCE VAIY LI
Sbjct: 43 YTWGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLI 102
Query: 478 TAIVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXX 657
AIV S K ++ + + ++ G+ +F G+ VGL NL C
Sbjct: 103 IAIVFSA---KINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCVGITGSSAALA 159
Query: 658 XXXXXXXFVKILIVEIFGSAIGLFGLIVGIYMTSK 762
FVK+L+VEIFGS +GLFGLIVG+ + K
Sbjct: 160 DAQDASLFVKVLVVEIFGSVLGLFGLIVGLLIGGK 194
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 74.9 bits (176), Expect = 1e-14
Identities = 43/153 (28%), Positives = 73/153 (47%)
Frame = +1
Query: 304 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 483
+G +G ++ + GAA G GV I GV P + KN I V+ +AIYGL+ +
Sbjct: 13 FGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAIYGLVVS 72
Query: 484 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 663
+++SG L++ + +G++ GAGL+VGL L
Sbjct: 73 VLISGNLKQILSLY-----------SGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTA 121
Query: 664 XXXXXFVKILIVEIFGSAIGLFGLIVGIYMTSK 762
FV ++++ IF +GL+GLIV + + ++
Sbjct: 122 QQPRLFVAMILILIFAEVLGLYGLIVALLLNTR 154
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 69.7 bits (163), Expect = 5e-13
Identities = 42/153 (27%), Positives = 71/153 (46%)
Frame = +1
Query: 304 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 483
+G G+ S+ S +GA G G I G P I K+LI V+ + +YGL+ +
Sbjct: 13 FGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMS 72
Query: 484 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 663
++++G + P S+ +G++ AGLAVGL +
Sbjct: 73 VLIAGDMS----PDNDYSL-----FSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFM 123
Query: 664 XXXXXFVKILIVEIFGSAIGLFGLIVGIYMTSK 762
FV ++++ IF +GL+GLIVG+ + +K
Sbjct: 124 RQDRIFVSMVLILIFAEVLGLYGLIVGLILQTK 156
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 29.9 bits (64), Expect = 0.49
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 675 GSVGSIR*SSTRAHDTNSNSTE*IHQANSESSAEHHV-SRHPVL 547
GSV + SS R + T +NS S+AE+HV SRH V+
Sbjct: 830 GSVSDVSFSSIRVNIAGVKITAKSSTSNSSSTAEYHVRSRHAVI 873
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 29.9 bits (64), Expect = 0.49
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = -2
Query: 756 CHINANNKAKKTNGRSKNLNDEDLDEQGSVGSIR*SSTRAHDTNSNSTE*IHQANSESSA 577
C+ N+++ +TNG S + N+ + + S S + + + +D+ SNS E I +SS
Sbjct: 46 CNGNSHSLKHETNGASSSNNN--VAKSSSHDSFK-AKPKNYDSTSNSNEPISFNEPDSSN 102
Query: 576 EHH 568
HH
Sbjct: 103 SHH 105
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 274 GSWRTLPRYMWGTLGIAFSVALSVVGAAMGIHTTGVSI 387
G RTL RY W T+ FS ++++ AA+ T + I
Sbjct: 551 GLKRTLDRYYWTTVYCGFSTIVTLIFAALLTKNTNLLI 588
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 492 EHDSSDQTVNGNGLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQGNGKGD 319
E D++ +N A +G +L+ DS +++ +S VD+H S N KG+
Sbjct: 22 EQDAASVKINSTR-ASPNGSDLLNDDSEAAKITTNEKQSSPVDSHNESPNDTTINKGE 78
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 171 YFLSYLFVLLVGLAIPIF-SLYYVLNGKGEQISLGWFLENTSPXYVGY 311
Y L L L+G+ F ++YY L + + +L FL+NT P Y
Sbjct: 302 YALRDLAAFLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKPYSTHY 349
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 747 NANNKAKKTNGRSKNLNDEDLDEQ 676
N NN + NG S +L+ +D+D+Q
Sbjct: 84 NVNNGSNSVNGASHDLDSKDVDKQ 107
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +3
Query: 138 TKYLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVLN 245
+ ++N+N+ +R ++S++ + +A SLY+ LN
Sbjct: 2008 SSFINENMYLRLWISHIASWIYAVASASGSLYFSLN 2043
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 26.2 bits (55), Expect = 6.0
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = -2
Query: 447 EDDGDQILSLDSRCFDT--SSHYADTSSVDAHGCSDNGQGNGKGDSEGTPHIXG--KCSP 280
++D D S D+ +T SS+ + V + DNG+ + + E TP I K S
Sbjct: 265 KEDADSAASSDAAELETDKSSNLSSNGEVKSDLKQDNGKEEPEKEVESTPSILQNFKVSL 324
Query: 279 RTIPNLSAHPF 247
+ N+ PF
Sbjct: 325 VNVENVPNEPF 335
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 457 VAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAG 564
++I + A +LS L Y+EPF +S KQ + G
Sbjct: 74 LSIIAICFACLLSPSLRPYAEPFIFLSYKQPDGSYG 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,497,379
Number of Sequences: 5004
Number of extensions: 75216
Number of successful extensions: 263
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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