Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_C11
(865 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 160 1e-39
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 160 1e-39
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 67 1e-11
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 67 1e-11
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 64 9e-11
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 64 9e-11
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 64 9e-11
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 64 9e-11
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 31 1.4
Z92828-7|CAE48500.1| 700|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z81561-2|CAB04551.2| 700|Caenorhabditis elegans Hypothetical pr... 30 2.4
AF342986-1|AAL73338.1| 700|Caenorhabditis elegans KAL-1 protein. 30 2.4
U53333-12|AAA96165.1| 387|Caenorhabditis elegans Nuclear hormon... 29 5.7
AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin reu... 28 7.5
AF036705-2|AAM98021.1| 237|Caenorhabditis elegans Hypothetical ... 28 7.5
AF036705-1|AAB95170.1| 249|Caenorhabditis elegans Hypothetical ... 28 7.5
AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of... 28 7.5
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z48716-1|CAA88601.1| 482|Caenorhabditis elegans Hypothetical pr... 28 9.9
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 9.9
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 28 9.9
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 9.9
AF038608-10|AAC25814.2| 327|Caenorhabditis elegans Serpentine r... 28 9.9
AF016449-13|AAG24003.1| 350|Caenorhabditis elegans Serpentine r... 28 9.9
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 160 bits (389), Expect = 1e-39
Identities = 83/163 (50%), Positives = 107/163 (65%), Gaps = 5/163 (3%)
Frame = +1
Query: 298 YMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLI 477
+MW LGI FS++LSV+GA GI TTG SI+GGGVKAPRI+TKNL+S+IFCEAVAI+G+I
Sbjct: 49 HMWAGLGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGII 108
Query: 478 TAIVLSGMLEKYSE---PFT--SVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXX 642
A V G L ++ P T +++ +N +GY++FG GL VGL NL C
Sbjct: 109 MAFVFVGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGLTVGLSNLVCGLAVGIVGS 168
Query: 643 XXXXXXXXXXXXFVKILIVEIFGSAIGLFGLIVGIYMTSKVKW 771
FVKILI+EIF SAIGLFG+I+GI T+K +
Sbjct: 169 GAAIADAANPALFVKILIIEIFASAIGLFGMIIGIVQTNKASF 211
Score = 35.9 bits (79), Expect = 0.037
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +3
Query: 228 LYYVLNGKGEQISLGWFLENTSP 296
L+Y+L+G+G + +GWFL +TSP
Sbjct: 26 LFYMLSGQGHRFDIGWFLTSTSP 48
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 160 bits (389), Expect = 1e-39
Identities = 83/163 (50%), Positives = 107/163 (65%), Gaps = 5/163 (3%)
Frame = +1
Query: 298 YMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLI 477
+MW LGI FS++LSV+GA GI TTG SI+GGGVKAPRI+TKNL+S+IFCEAVAI+G+I
Sbjct: 49 HMWAGLGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGII 108
Query: 478 TAIVLSGMLEKYSE---PFT--SVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXX 642
A V G L ++ P T +++ +N +GY++FG GL VGL NL C
Sbjct: 109 MAFVFVGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGLTVGLSNLVCGLAVGIVGS 168
Query: 643 XXXXXXXXXXXXFVKILIVEIFGSAIGLFGLIVGIYMTSKVKW 771
FVKILI+EIF SAIGLFG+I+GI T+K +
Sbjct: 169 GAAIADAANPALFVKILIIEIFASAIGLFGMIIGIVQTNKASF 211
Score = 35.9 bits (79), Expect = 0.037
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +3
Query: 228 LYYVLNGKGEQISLGWFLENTSP 296
L+Y+L+G+G + +GWFL +TSP
Sbjct: 26 LFYMLSGQGHRFDIGWFLTSTSP 48
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 67.3 bits (157), Expect = 1e-11
Identities = 41/150 (27%), Positives = 67/150 (44%)
Frame = +1
Query: 304 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 483
+G+LG+ ++A + G+A G G I V P + K +I V+ VAIYGL+ A
Sbjct: 25 FGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIYGLVVA 84
Query: 484 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 663
+++SG +E +T + Q F GL GL L
Sbjct: 85 VIVSGKVEPAGANYTINNAFSQ--------FAGGLVCGLCGLGAGYAIGIAGDAGVRALS 136
Query: 664 XXXXXFVKILIVEIFGSAIGLFGLIVGIYM 753
FV ++++ IF +GL+G+IV + +
Sbjct: 137 QQPRMFVGMILILIFAEVLGLYGMIVALIL 166
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 67.3 bits (157), Expect = 1e-11
Identities = 41/150 (27%), Positives = 67/150 (44%)
Frame = +1
Query: 304 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 483
+G+LG+ ++A + G+A G G I V P + K +I V+ VAIYGL+ A
Sbjct: 25 FGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIYGLVVA 84
Query: 484 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 663
+++SG +E +T + Q F GL GL L
Sbjct: 85 VIVSGKVEPAGANYTINNAFSQ--------FAGGLVCGLCGLGAGYAIGIAGDAGVRALS 136
Query: 664 XXXXXFVKILIVEIFGSAIGLFGLIVGIYM 753
FV ++++ IF +GL+G+IV + +
Sbjct: 137 QQPRMFVGMILILIFAEVLGLYGMIVALIL 166
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 64.5 bits (150), Expect = 9e-11
Identities = 44/150 (29%), Positives = 68/150 (45%)
Frame = +1
Query: 304 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 483
+G +G A + +V+GAA G + V I GV P + K++I VI + IYGL+ A
Sbjct: 17 FGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVA 76
Query: 484 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 663
+VL G + TS S + G+ AGL GL L
Sbjct: 77 MVLKGKV-------TSASA-GYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTA 128
Query: 664 XXXXXFVKILIVEIFGSAIGLFGLIVGIYM 753
FV ++++ IF +GL+G+IV + +
Sbjct: 129 QQPRLFVGMILILIFSEVLGLYGMIVALIL 158
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 64.5 bits (150), Expect = 9e-11
Identities = 44/150 (29%), Positives = 68/150 (45%)
Frame = +1
Query: 304 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 483
+G +G A + +V+GAA G + V I GV P + K++I VI + IYGL+ A
Sbjct: 17 FGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVA 76
Query: 484 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 663
+VL G + TS S + G+ AGL GL L
Sbjct: 77 MVLKGKV-------TSASA-GYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTA 128
Query: 664 XXXXXFVKILIVEIFGSAIGLFGLIVGIYM 753
FV ++++ IF +GL+G+IV + +
Sbjct: 129 QQPRLFVGMILILIFSEVLGLYGMIVALIL 158
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 64.5 bits (150), Expect = 9e-11
Identities = 44/150 (29%), Positives = 68/150 (45%)
Frame = +1
Query: 304 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 483
+G +G A + +V+GAA G + V I GV P + K++I VI + IYGL+ A
Sbjct: 17 FGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVA 76
Query: 484 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 663
+VL G + TS S + G+ AGL GL L
Sbjct: 77 MVLKGKV-------TSASA-GYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTA 128
Query: 664 XXXXXFVKILIVEIFGSAIGLFGLIVGIYM 753
FV ++++ IF +GL+G+IV + +
Sbjct: 129 QQPRLFVGMILILIFSEVLGLYGMIVALIL 158
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 64.5 bits (150), Expect = 9e-11
Identities = 44/150 (29%), Positives = 68/150 (45%)
Frame = +1
Query: 304 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 483
+G +G A + +V+GAA G + V I GV P + K++I VI + IYGL+ A
Sbjct: 17 FGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVA 76
Query: 484 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 663
+VL G + TS S + G+ AGL GL L
Sbjct: 77 MVLKGKV-------TSASA-GYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTA 128
Query: 664 XXXXXFVKILIVEIFGSAIGLFGLIVGIYM 753
FV ++++ IF +GL+G+IV + +
Sbjct: 129 QQPRLFVGMILILIFSEVLGLYGMIVALIL 158
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 30.7 bits (66), Expect = 1.4
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Frame = -2
Query: 651 SSTRAHDTNSNSTE*IHQANSESSAEHHVSRHPVLLLDGHTSKWFRIFLQHPREHDSSDQ 472
SST+ TN N T +++ +++ S H + +W R + E +S ++
Sbjct: 110 SSTKQFGTNQNKTS---KSDQNKTSKRKSSAHTDEKESENREEWSRRSRRKCGE-ESDNE 165
Query: 471 TVNGNGLAEDDGDQILSLDSRCFDTSSHYADTS----SVDAHGCSDNGQGNGKGDSEG 310
+ NG A D+G++ + + + +S + S D SDNG+ + G+ G
Sbjct: 166 IESDNGEASDNGEESDNGEESDNEEASDNGEASDNGEESDNEEASDNGEESDNGEERG 223
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 486 DSSDQTVNGNGLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEG 310
+S + GNG A D+GD+ S + D + + D SDNG+ + G+ G
Sbjct: 215 ESDNGEERGNGEASDNGDE--SDNGEASDNGEESDNEEASDNGEESDNGEESDNGEERG 271
>Z92828-7|CAE48500.1| 700|Caenorhabditis elegans Hypothetical
protein K03D10.1 protein.
Length = 700
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/69 (36%), Positives = 33/69 (47%)
Frame = -2
Query: 651 SSTRAHDTNSNSTE*IHQANSESSAEHHVSRHPVLLLDGHTSKWFRIFLQHPREHDSSDQ 472
SS D +S +T Q SESSA H +RH + T +RI L P HD ++
Sbjct: 556 SSLTPIDCSSVTTPIQCQVTSESSAHCHWTRHHDAM---QTVIGYRILLSSPINHD-TNT 611
Query: 471 TVNGNGLAE 445
T+N L E
Sbjct: 612 TINQPQLRE 620
>Z81561-2|CAB04551.2| 700|Caenorhabditis elegans Hypothetical
protein K03D10.1 protein.
Length = 700
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/69 (36%), Positives = 33/69 (47%)
Frame = -2
Query: 651 SSTRAHDTNSNSTE*IHQANSESSAEHHVSRHPVLLLDGHTSKWFRIFLQHPREHDSSDQ 472
SS D +S +T Q SESSA H +RH + T +RI L P HD ++
Sbjct: 556 SSLTPIDCSSVTTPIQCQVTSESSAHCHWTRHHDAM---QTVIGYRILLSSPINHD-TNT 611
Query: 471 TVNGNGLAE 445
T+N L E
Sbjct: 612 TINQPQLRE 620
>AF342986-1|AAL73338.1| 700|Caenorhabditis elegans KAL-1 protein.
Length = 700
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/69 (36%), Positives = 33/69 (47%)
Frame = -2
Query: 651 SSTRAHDTNSNSTE*IHQANSESSAEHHVSRHPVLLLDGHTSKWFRIFLQHPREHDSSDQ 472
SS D +S +T Q SESSA H +RH + T +RI L P HD ++
Sbjct: 556 SSLTPIDCSSVTTPIQCQVTSESSAHCHWTRHHDAM---QTVIGYRILLSSPINHD-TNT 611
Query: 471 TVNGNGLAE 445
T+N L E
Sbjct: 612 TINQPQLRE 620
>U53333-12|AAA96165.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 78 protein.
Length = 387
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 293 PXICGVPS-ESPFPLPCPLSEQPWASTLLVSA*WEEVSKHLESRLRI*SPSSSARPLPFT 469
P PS SPF PCP S S LL +E+ K E ++ S + +R + FT
Sbjct: 92 PTTSASPSIPSPFSPPCPSSHNSAPSGLLSPMETDEIQKLNEHFFKMDSNLNKSRRMAFT 151
Query: 470 V*SLLSCSLG 499
LL G
Sbjct: 152 DSRLLDIFSG 161
>AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin
reuptake transporter protein.
Length = 671
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 177 LSYLFVLLVGLAIPIFSLYYVLNGKG 254
L + LL LAIP+F++ Y+L+G G
Sbjct: 602 LGWFLRLLSVLAIPVFAIIYLLSGTG 627
>AF036705-2|AAM98021.1| 237|Caenorhabditis elegans Hypothetical
protein F37C4.4b protein.
Length = 237
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/88 (23%), Positives = 44/88 (50%)
Frame = +1
Query: 337 LSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYS 516
++ V A + + T + + G V R +T ++ ++FC A+ L+ I L+ YS
Sbjct: 92 MNTVSAIVSLLTGAMGL--GAVHRYRWRTMLILWLVFCIMSAVGSLLAVITTGIWLDHYS 149
Query: 517 EPFTSVSVKQQNWMAGYVMFGAGLAVGL 600
+ V N ++G+++ A +A+G+
Sbjct: 150 K--MKVRTAIGNGLSGFMLL-ASVALGV 174
>AF036705-1|AAB95170.1| 249|Caenorhabditis elegans Hypothetical
protein F37C4.4a protein.
Length = 249
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/88 (23%), Positives = 44/88 (50%)
Frame = +1
Query: 337 LSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYS 516
++ V A + + T + + G V R +T ++ ++FC A+ L+ I L+ YS
Sbjct: 104 MNTVSAIVSLLTGAMGL--GAVHRYRWRTMLILWLVFCIMSAVGSLLAVITTGIWLDHYS 161
Query: 517 EPFTSVSVKQQNWMAGYVMFGAGLAVGL 600
+ V N ++G+++ A +A+G+
Sbjct: 162 K--MKVRTAIGNGLSGFMLL-ASVALGV 186
>AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 5 protein.
Length = 671
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 177 LSYLFVLLVGLAIPIFSLYYVLNGKG 254
L + LL LAIP+F++ Y+L+G G
Sbjct: 602 LGWFLRLLSVLAIPVFAIIYLLSGTG 627
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 621 CCWYRGLWCCSSGCCQRC 674
CC R CC + CC RC
Sbjct: 95 CCCRRCCTCCRTCCCTRC 112
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 621 CCWYRGLWCCSSGCCQRC 674
CC R CC + CC RC
Sbjct: 93 CCCRRCCTCCRTCCCTRC 110
>Z48716-1|CAA88601.1| 482|Caenorhabditis elegans Hypothetical
protein F59B10.2 protein.
Length = 482
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/89 (24%), Positives = 34/89 (38%)
Frame = -2
Query: 729 KKTNGRSKNLNDEDLDEQGSVGSIR*SSTRAHDTNSNSTE*IHQANSESSAEHHVSRHPV 550
K+ R K E S SST T+S S+ ++ SES +E VS
Sbjct: 197 KEQKARKKKEKTPTPTESSFESSSDSSSTSESSTSSESSSSASESESESKSESQVSSSKT 256
Query: 549 LLLDGHTSKWFRIFLQHPREHDSSDQTVN 463
+SK + + + SS T++
Sbjct: 257 STSKASSSKAYGSDFESEKSSSSSASTIS 285
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 621 CCWYRGLWCCSSGCCQRC 674
CC R CC + CC RC
Sbjct: 94 CCCRRCCTCCRTCCCTRC 111
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 621 CCWYRGLWCCSSGCCQRC 674
CC R CC + CC RC
Sbjct: 94 CCCRRCCTCCRTCCCTRC 111
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 621 CCWYRGLWCCSSGCCQRC 674
CC R CC + CC RC
Sbjct: 95 CCCRRCCTCCRTCCCTRC 112
>AF038608-10|AAC25814.2| 327|Caenorhabditis elegans Serpentine
receptor, class z protein78 protein.
Length = 327
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 147 GIWCCFYPLIPKGTAFFRPIFALTRKLKTERSC 49
G FY L+ TAF+ PI TRK + ++C
Sbjct: 198 GFVALFYVLLFLSTAFYIPIMIRTRKFASIQNC 230
>AF016449-13|AAG24003.1| 350|Caenorhabditis elegans Serpentine
receptor, class t protein8 protein.
Length = 350
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 171 YFLSYLFVLLVGLAIPIFSLYYVLN 245
YFL +L VL + L IP++ L VL+
Sbjct: 52 YFLCFLAVLKLNLKIPVYQLMLVLS 76
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,340,471
Number of Sequences: 27780
Number of extensions: 429232
Number of successful extensions: 1549
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -