Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_C10
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    28   2.0  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   4.6  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 628 PPGSSLVRSPGSDPCRLPDT 687
           PP SSL+++P +D C  P+T
Sbjct: 149 PPSSSLLKTPDNDFCARPET 168


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 612 KIPGVSPWKLPRALSWFRPLPLTGYLSAFLP 704
           ++P  S W + R  SW+  L L  +LS+  P
Sbjct: 124 QMPSSSQWSIVRNSSWYENLKLLKFLSSVGP 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,860
Number of Sequences: 5004
Number of extensions: 58423
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)