Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_C09
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81592-10|CAB04732.1|  240|Caenorhabditis elegans Hypothetical p...   155   3e-38
AY731377-1|AAW63419.1|  240|Caenorhabditis elegans eukaryotic in...   155   3e-38
Z34799-6|CAA84317.2|  280|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AF134806-1|AAD29691.1|  280|Caenorhabditis elegans putative zinc...    31   1.4  
Z70683-6|CAA94591.2|  512|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>Z81592-10|CAB04732.1|  240|Caenorhabditis elegans Hypothetical
           protein T16G1.11 protein.
          Length = 240

 Score =  155 bits (377), Expect = 3e-38
 Identities = 78/227 (34%), Positives = 128/227 (56%), Gaps = 19/227 (8%)
 Frame = +3

Query: 171 ETMKQTVASILKSIERYNPANLEILERYVEMQSRENTYDLGANLAVLKLYQFNPEKFNAD 350
           E +++ +   ++ + RYNP N+  L   V+    EN YD    L +LKLYQ NPEK++  
Sbjct: 4   EKLQKELHEAIEGVNRYNPENVADLAACVQAMVNENKYDKDIVLTILKLYQLNPEKYDEA 63

Query: 351 ITCQILLKALTNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFWNRVH-- 524
           +  Q+LLK L   P +DF L KCL+  + + ++ + +I  L  +LE C+FA FW  V   
Sbjct: 64  VVRQVLLKTLMVLPSSDFALAKCLIDTNRLGSQELRRIFDLGAVLESCNFAVFWKLVKGA 123

Query: 525 ---------------QMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLANLLGGIDD 659
                          ++P++   + GF D+++ + C V+ +TFQ I+K  L+ LLGG  D
Sbjct: 124 YKPTTNPNEPFKVPGEVPKMIKPMVGFEDAVKHYACRVISVTFQKIEKKMLSRLLGGASD 183

Query: 660 VTLKHWVKKYGW--RDDGSLIFIANXDENIKTKNITEKIEFDHLAPI 794
             +    + +GW  +++G + F+AN +  IKT+NI EKI+F H+A +
Sbjct: 184 KEVTALAQSFGWEAKENGDVFFVANHEGTIKTRNIDEKIQFPHVADL 230


>AY731377-1|AAW63419.1|  240|Caenorhabditis elegans eukaryotic
           initiation factor eIF-3.K protein.
          Length = 240

 Score =  155 bits (377), Expect = 3e-38
 Identities = 78/227 (34%), Positives = 128/227 (56%), Gaps = 19/227 (8%)
 Frame = +3

Query: 171 ETMKQTVASILKSIERYNPANLEILERYVEMQSRENTYDLGANLAVLKLYQFNPEKFNAD 350
           E +++ +   ++ + RYNP N+  L   V+    EN YD    L +LKLYQ NPEK++  
Sbjct: 4   EKLQKELHEAIEGVNRYNPENVADLAACVQAMVNENKYDKDIVLTILKLYQLNPEKYDEA 63

Query: 351 ITCQILLKALTNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFWNRVH-- 524
           +  Q+LLK L   P +DF L KCL+  + + ++ + +I  L  +LE C+FA FW  V   
Sbjct: 64  VVRQVLLKTLMVLPSSDFALAKCLIDTNRLGSQELRRIFDLGAVLESCNFAVFWKLVKGA 123

Query: 525 ---------------QMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLANLLGGIDD 659
                          ++P++   + GF D+++ + C V+ +TFQ I+K  L+ LLGG  D
Sbjct: 124 YKPTTNPNEPFKVPGEVPKMIKPMVGFEDAVKHYACRVISVTFQKIEKKMLSRLLGGASD 183

Query: 660 VTLKHWVKKYGW--RDDGSLIFIANXDENIKTKNITEKIEFDHLAPI 794
             +    + +GW  +++G + F+AN +  IKT+NI EKI+F H+A +
Sbjct: 184 KEVTALAQSFGWEAKENGDVFFVANHEGTIKTRNIDEKIQFPHVADL 230


>Z34799-6|CAA84317.2|  280|Caenorhabditis elegans Hypothetical
           protein F34D10.5 protein.
          Length = 280

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -3

Query: 374 FQKYLTCNVCVKLFGIKLI*LEHS*ISSQI---VCVFSGLHFDISF 246
           FQ  LTC++C K FG++ +   H    S +   +C F G  F+ +F
Sbjct: 129 FQDSLTCHICGKKFGLQRLLNRHIKCHSDLKRYLCTFCGKGFNDTF 174


>AF134806-1|AAD29691.1|  280|Caenorhabditis elegans putative zinc
           finger transcriptionfactor protein.
          Length = 280

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -3

Query: 374 FQKYLTCNVCVKLFGIKLI*LEHS*ISSQI---VCVFSGLHFDISF 246
           FQ  LTC++C K FG++ +   H    S +   +C F G  F+ +F
Sbjct: 129 FQDSLTCHICGKKFGLQRLLNRHIKCHSDLKRYLCTFCGKGFNDTF 174


>Z70683-6|CAA94591.2|  512|Caenorhabditis elegans Hypothetical
           protein F13B12.2 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 423 LLESVVENETISQIKYLADILEQCD---FAQFWNRVHQMPELCSRISGF-HDSIRK 578
           LL+     E I  IK+  DI +  +     ++W+ V +MPE  S  S F + SIR+
Sbjct: 233 LLQMGRYTEAIESIKFYYDIEDSDEDEIIKEYWDMVPEMPEQLSLCSAFSNSSIRR 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,055,349
Number of Sequences: 27780
Number of extensions: 376736
Number of successful extensions: 843
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)