Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_C08
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    42   1e-04
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    27   3.4  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
 Frame = +2

Query: 449 IEPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIEPL-LNYGVKCMSMG-LLVSGEN 622
           +E DK+IGL+D D+ GPS+P +M +  E          P+ +   +  MS+G LL S ++
Sbjct: 87  LEEDKQIGLMDVDICGPSIPRIMGVEKEEAHQSSKGWSPIYVCPNLAVMSIGFLLPSEDS 146

Query: 623 XVMCRG 640
            V+ RG
Sbjct: 147 SVIWRG 152


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 443 KVIEPDKEIGLLDADVFGPSVPLMMNISGE 532
           KV     + G+LD D+ GPS+P M     E
Sbjct: 34  KVYSRPLKTGILDIDLTGPSIPRMFGKDAE 63



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 714 VXPPPGTGDTHLSLAXXL 767
           +  PPGTGD HL++   L
Sbjct: 129 IDTPPGTGDEHLTIVESL 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,303
Number of Sequences: 5004
Number of extensions: 57636
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)