Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_C08
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0387 + 23708447-23708470,23708616-23708739,23709081-237092...    71   2e-12
04_04_0299 - 24243364-24244259,24244417-24244428,24245092-242451...    39   0.004
02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842     38   0.008
01_06_0521 + 30001662-30001752,30001883-30001999,30002099-300022...    37   0.018
04_04_0976 + 29839697-29840350                                         30   2.1  
05_04_0432 + 21178662-21178798,21178973-21179033,21179260-211793...    28   8.4  

>03_05_0387 +
           23708447-23708470,23708616-23708739,23709081-23709203,
           23710723-23710820,23711778-23711918,23712236-23712361,
           23713316-23713486
          Length = 268

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 35/96 (36%), Positives = 56/96 (58%)
 Frame = +2

Query: 353 LPGVKSIILXXXXXXXXXXXXXXXNLACAMKVIEPDKEIGLLDADVFGPSVPLMMNISGE 532
           + GV  II                N+A A+   +   ++GLLDAD++GPS+P MMN+  +
Sbjct: 27  IAGVSDIIAVASGKGGVGKSTTAVNIAVALAK-KFQLKVGLLDADIYGPSIPTMMNLHAK 85

Query: 533 PMLNDDHLIEPLLNYGVKCMSMGLLVSGENXVMCRG 640
           P +++D  + P+ NYGV+CMS+G LV  +  ++ RG
Sbjct: 86  PEVSEDMRMIPVDNYGVQCMSIGFLVDKDAPIVWRG 121


>04_04_0299 -
           24243364-24244259,24244417-24244428,24245092-24245193,
           24245298-24245340
          Length = 350

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
 Frame = +2

Query: 452 EPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIEPL-LNYGVKCMSMG-LLVSGENX 625
           E D ++GLLD D+ GPS+P M+ + G+ +   +    P+ +   +  MS+G +L + ++ 
Sbjct: 92  EMDHQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESNLGVMSIGFMLPNPDDA 151

Query: 626 VMCRG 640
           V+ RG
Sbjct: 152 VIWRG 156


>02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842
          Length = 355

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
 Frame = +2

Query: 452 EPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIEPL-LNYGVKCMSMG-LLVSGENX 625
           E D ++GLLD D+ GPS+P M+ + G+ +   +    P+ +   +  MS+G +L + ++ 
Sbjct: 96  EMDCQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESNLGVMSIGFMLPNPDDA 155

Query: 626 VMCRG 640
           V+ RG
Sbjct: 156 VIWRG 160


>01_06_0521 +
           30001662-30001752,30001883-30001999,30002099-30002229,
           30002320-30002370,30002639-30002689,30002864-30003007,
           30003082-30003224,30003376-30003448,30003540-30003635,
           30003737-30003835,30003905-30003958,30004032-30004155,
           30004420-30004544,30004720-30004842,30004948-30005028
          Length = 500

 Score = 37.1 bits (82), Expect = 0.018
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +2

Query: 467 IGLLDADVFGPSVPLMMNISGE--PMLNDDHLIEPLLNYGVKCMSMGLLVSGENXVMCRG 640
           +G+ DADVFGPS+P M++       M  +   I P    GVK +S G   +G+   + RG
Sbjct: 170 VGIFDADVFGPSLPTMVSPENRLLVMNPESRSILPTEYLGVKMVSFGF--AGQGRAIMRG 227


>04_04_0976 + 29839697-29840350
          Length = 217

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 394 RRCWKNYHSCKPSMCYESNRTGQGNR 471
           RRCW+      PS C +S R+ QG R
Sbjct: 174 RRCWQRRRPPPPSRCGKSYRSSQGRR 199


>05_04_0432 +
           21178662-21178798,21178973-21179033,21179260-21179339,
           21179650-21179794,21180411-21180620,21180956-21181004,
           21181199-21181326
          Length = 269

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 364 KEYHTCSFRERRCWKNYHSCKPSMCY 441
           +E H   +++R  W ++H+ +PS+C+
Sbjct: 243 EELHDEQYQQRIAWIHWHTYRPSLCH 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,650,873
Number of Sequences: 37544
Number of extensions: 359094
Number of successful extensions: 573
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)