Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_C08
(865 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC024919-1|AAH24919.1| 289|Homo sapiens nucleotide binding prot... 114 3e-25
AK022722-1|BAB14203.1| 289|Homo sapiens protein ( Homo sapiens ... 114 3e-25
BC008005-1|AAH08005.1| 271|Homo sapiens nucleotide binding prot... 40 0.009
BC002768-1|AAH02768.1| 271|Homo sapiens nucleotide binding prot... 40 0.009
AL031724-1|CAC36077.1| 265|Homo sapiens C447E6.1 (nucleotide bi... 40 0.009
AK001023-1|BAA91471.1| 271|Homo sapiens protein ( Homo sapiens ... 40 0.009
AF118394-1|AAD45242.1| 271|Homo sapiens putative nucleotide bin... 40 0.009
U01833-1|AAA61932.1| 320|Homo sapiens protein ( Human nucleotid... 38 0.062
BC109323-1|AAI09324.1| 320|Homo sapiens nucleotide binding prot... 38 0.062
BC109322-1|AAI09323.1| 320|Homo sapiens nucleotide binding prot... 38 0.062
BC100290-1|AAI00291.1| 309|Homo sapiens NUBP1 protein protein. 38 0.062
AK223204-1|BAD96924.1| 320|Homo sapiens nucleotide binding prot... 38 0.062
>BC024919-1|AAH24919.1| 289|Homo sapiens nucleotide binding
protein-like protein.
Length = 289
Score = 114 bits (275), Expect = 3e-25
Identities = 54/117 (46%), Positives = 72/117 (61%)
Frame = +2
Query: 299 IMDHRAKVMSKGLPEKKPLPGVKSIILXXXXXXXXXXXXXXXNLACAMKVIEPDKEIGLL 478
+ R ++MS+GLP++KP+ GVK +I+ NLA A+ + K IGLL
Sbjct: 15 LKQRRTQIMSRGLPKQKPIEGVKQVIVVASGKGGVGKSTTAVNLALALAANDSSKAIGLL 74
Query: 479 DADVFGPSVPLMMNISGEPMLNDDHLIEPLLNYGVKCMSMGLLVSGENXVMCRGLXV 649
D DV+GPSVP MMN+ G P L+ +L+ PLLNYG+ CMSMG LV V+ RGL V
Sbjct: 75 DVDVYGPSVPKMMNLKGNPELSQSNLMRPLLNYGIACMSMGFLVEESEPVVWRGLMV 131
>AK022722-1|BAB14203.1| 289|Homo sapiens protein ( Homo sapiens
cDNA FLJ12660 fis, clone NT2RM4002174, moderately
similar to MRP PROTEIN. ).
Length = 289
Score = 114 bits (275), Expect = 3e-25
Identities = 54/117 (46%), Positives = 72/117 (61%)
Frame = +2
Query: 299 IMDHRAKVMSKGLPEKKPLPGVKSIILXXXXXXXXXXXXXXXNLACAMKVIEPDKEIGLL 478
+ R ++MS+GLP++KP+ GVK +I+ NLA A+ + K IGLL
Sbjct: 15 LKQRRTQIMSRGLPKQKPIEGVKQVIVVASGKGGVGKSTTAVNLALALAANDSSKAIGLL 74
Query: 479 DADVFGPSVPLMMNISGEPMLNDDHLIEPLLNYGVKCMSMGLLVSGENXVMCRGLXV 649
D DV+GPSVP MMN+ G P L+ +L+ PLLNYG+ CMSMG LV V+ RGL V
Sbjct: 75 DVDVYGPSVPKMMNLKGNPELSQSNLMRPLLNYGIACMSMGFLVEESEPVVWRGLMV 131
>BC008005-1|AAH08005.1| 271|Homo sapiens nucleotide binding protein
2 (MinD homolog, E. coli) protein.
Length = 271
Score = 40.3 bits (90), Expect = 0.009
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Frame = +2
Query: 353 LPGVKSIILXXXXXXXXXXXXXXXNLACAMKVIEPDKEIGLLDADVFGPSVPLMMNISGE 532
L GV+ IIL LA A++ K++G+LD D+ GPS+P M+ G
Sbjct: 10 LAGVRHIILVLSGKGGVGKSTISTELALALR--HAGKKVGILDVDLCGPSIPRMLGAQGR 67
Query: 533 PMLNDDHLIEPLL---NYGVKCMSMG-LLVSGENXVMCRG 640
+ D P+ + MS+G LL + V+ RG
Sbjct: 68 AVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVWRG 107
>BC002768-1|AAH02768.1| 271|Homo sapiens nucleotide binding protein
2 (MinD homolog, E. coli) protein.
Length = 271
Score = 40.3 bits (90), Expect = 0.009
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Frame = +2
Query: 353 LPGVKSIILXXXXXXXXXXXXXXXNLACAMKVIEPDKEIGLLDADVFGPSVPLMMNISGE 532
L GV+ IIL LA A++ K++G+LD D+ GPS+P M+ G
Sbjct: 10 LAGVRHIILVLSGKGGVGKSTISTELALALR--HAGKKVGILDVDLCGPSIPRMLGAQGR 67
Query: 533 PMLNDDHLIEPLL---NYGVKCMSMG-LLVSGENXVMCRG 640
+ D P+ + MS+G LL + V+ RG
Sbjct: 68 AVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVWRG 107
>AL031724-1|CAC36077.1| 265|Homo sapiens C447E6.1 (nucleotide
binding protein 1 (E.coli MinD like) ) protein.
Length = 265
Score = 40.3 bits (90), Expect = 0.009
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Frame = +2
Query: 353 LPGVKSIILXXXXXXXXXXXXXXXNLACAMKVIEPDKEIGLLDADVFGPSVPLMMNISGE 532
L GV+ IIL LA A++ K++G+LD D+ GPS+P M+ G
Sbjct: 4 LAGVRHIILVLSGKGGVGKSTISTELALALR--HAGKKVGILDVDLCGPSIPRMLGAQGR 61
Query: 533 PMLNDDHLIEPLL---NYGVKCMSMG-LLVSGENXVMCRG 640
+ D P+ + MS+G LL + V+ RG
Sbjct: 62 AVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVWRG 101
>AK001023-1|BAA91471.1| 271|Homo sapiens protein ( Homo sapiens
cDNA FLJ10161 fis, clone HEMBA1003555, moderately
similar to NUCLEOTIDE-BINDING PROTEIN. ).
Length = 271
Score = 40.3 bits (90), Expect = 0.009
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Frame = +2
Query: 353 LPGVKSIILXXXXXXXXXXXXXXXNLACAMKVIEPDKEIGLLDADVFGPSVPLMMNISGE 532
L GV+ IIL LA A++ K++G+LD D+ GPS+P M+ G
Sbjct: 10 LAGVRHIILVLSGKGGVGKSTISTELALALR--HAGKKVGILDVDLCGPSIPRMLGAQGR 67
Query: 533 PMLNDDHLIEPLL---NYGVKCMSMG-LLVSGENXVMCRG 640
+ D P+ + MS+G LL + V+ RG
Sbjct: 68 AVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVWRG 107
>AF118394-1|AAD45242.1| 271|Homo sapiens putative nucleotide
binding protein protein.
Length = 271
Score = 40.3 bits (90), Expect = 0.009
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Frame = +2
Query: 353 LPGVKSIILXXXXXXXXXXXXXXXNLACAMKVIEPDKEIGLLDADVFGPSVPLMMNISGE 532
L GV+ IIL LA A++ K++G+LD D+ GPS+P M+ G
Sbjct: 10 LAGVRHIILVLSGKGGVGKSTISTELALALR--HAGKKVGILDVDLCGPSIPRMLGAQGR 67
Query: 533 PMLNDDHLIEPLL---NYGVKCMSMG-LLVSGENXVMCRG 640
+ D P+ + MS+G LL + V+ RG
Sbjct: 68 AVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVWRG 107
>U01833-1|AAA61932.1| 320|Homo sapiens protein ( Human
nucleotide-binding protein mRNA, complete cds. ).
Length = 320
Score = 37.5 bits (83), Expect = 0.062
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Frame = +2
Query: 452 EPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIEPLL---NYGVKCMSMGLLVSG-E 619
+ + +I LLD D+ GPS+P +M + GE + P+ N GV MS+G L+S +
Sbjct: 82 DENTQIALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVYVEDNLGV--MSVGFLLSSPD 139
Query: 620 NXVMCRG 640
+ V+ RG
Sbjct: 140 DAVIWRG 146
>BC109323-1|AAI09324.1| 320|Homo sapiens nucleotide binding protein
1 (MinD homolog, E. coli) protein.
Length = 320
Score = 37.5 bits (83), Expect = 0.062
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Frame = +2
Query: 452 EPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIEPLL---NYGVKCMSMGLLVSG-E 619
+ + +I LLD D+ GPS+P +M + GE + P+ N GV MS+G L+S +
Sbjct: 82 DENTQIALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVYVEDNLGV--MSVGFLLSSPD 139
Query: 620 NXVMCRG 640
+ V+ RG
Sbjct: 140 DAVIWRG 146
>BC109322-1|AAI09323.1| 320|Homo sapiens nucleotide binding protein
1 (MinD homolog, E. coli) protein.
Length = 320
Score = 37.5 bits (83), Expect = 0.062
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Frame = +2
Query: 452 EPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIEPLL---NYGVKCMSMGLLVSG-E 619
+ + +I LLD D+ GPS+P +M + GE + P+ N GV MS+G L+S +
Sbjct: 82 DENTQIALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVYVEDNLGV--MSVGFLLSSPD 139
Query: 620 NXVMCRG 640
+ V+ RG
Sbjct: 140 DAVIWRG 146
>BC100290-1|AAI00291.1| 309|Homo sapiens NUBP1 protein protein.
Length = 309
Score = 37.5 bits (83), Expect = 0.062
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +2
Query: 452 EPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIEPLLNYGVKCMSMGLLVSG-ENXV 628
+ + +I LLD D+ GPS+P +M + GE + D N GV MS+G L+S ++ V
Sbjct: 82 DENTQIALLDIDICGPSIPKIMGLEGEQYVED--------NLGV--MSVGFLLSSPDDAV 131
Query: 629 MCRG 640
+ RG
Sbjct: 132 IWRG 135
>AK223204-1|BAD96924.1| 320|Homo sapiens nucleotide binding protein
1 (MinD homolog, E. coli) variant protein.
Length = 320
Score = 37.5 bits (83), Expect = 0.062
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Frame = +2
Query: 452 EPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIEPLL---NYGVKCMSMGLLVSG-E 619
+ + +I LLD D+ GPS+P +M + GE + P+ N GV MS+G L+S +
Sbjct: 82 DENTQIALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVYVEDNLGV--MSVGFLLSSPD 139
Query: 620 NXVMCRG 640
+ V+ RG
Sbjct: 140 DAVIWRG 146
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,029,138
Number of Sequences: 237096
Number of extensions: 2178465
Number of successful extensions: 2534
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2534
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -