Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_C06
         (891 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    29   0.19 
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    27   0.58 
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    27   0.58 
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   5.4  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    24   7.1  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   9.4  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   9.4  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 29.1 bits (62), Expect = 0.19
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 387 KKEEDFNSLREYNDYLEEIETIVYNLTNNIDIVETNK-RIEQYKKENK 527
           +KEE  N LRE    LE+I   +  + + +  +E  K  + +Y+K +K
Sbjct: 171 RKEESMNLLRESEGKLEKISEYLRTIEDRLKTLEEEKEELSEYQKWDK 218


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 0.58
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +3

Query: 123 KIHSIMDDQACPRCKTTKYRNPSLKLMVNVCGHVLCENCVDLLFLKGSGSCPDCNI 290
           +IHS  DD+  P  K    R   +  +V  C H  CE C  L   K S  C  C +
Sbjct: 235 EIHS--DDEELP-FKCYVCRESFVDPIVTKCKHYFCERCA-LAQYKKSSRCAICGV 286


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 0.58
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +3

Query: 123 KIHSIMDDQACPRCKTTKYRNPSLKLMVNVCGHVLCENCVDLLFLKGSGSCPDCNI 290
           +IHS  DD+  P  K    R   +  +V  C H  CE C  L   K S  C  C +
Sbjct: 235 EIHS--DDEELP-FKCYVCRESFVDPIVTKCKHYFCERCA-LAQYKKSSRCAICGV 286


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1209

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = +3

Query: 285  NIVLRRGNFRVQLFEDPMVEKEVDIRKRVLRDYNKKEEDFNSLREYNDYLEEIETIVY 458
            +I++R     + ++E       +DI   V  D+N +      + +Y+D  EE++   Y
Sbjct: 1095 DILIRANRPDILVYEKRKKRATIDIDIAVTLDHNVQTTFSTKVMKYHDLAEELKQTWY 1152


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 318 QLFEDPMVEKEVDIRKRVLRDYNKKEEDFNSLREYN-DYL 434
           +L  +  VE ++D+R     + NKK  + + L  +N DY+
Sbjct: 449 KLISNEAVELDIDLRTSCNCEKNKKPMELSELCNFNGDYV 488


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -3

Query: 253 NSKSTQFSHKTWP---QTFTINFSDGFLYFVVLQRGQAWSSMI 134
           N ++T  +H +W    +   I + DGF+    +   + WSSM+
Sbjct: 104 NDRNTPVTHFSWSHDGRMALICYQDGFVLVGSVAGQRYWSSML 146


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 228 CENCVDLLFLKGSGSCPDC 284
           CE C +  F++  G C +C
Sbjct: 379 CERCKENFFMREDGYCINC 397


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 725,491
Number of Sequences: 2352
Number of extensions: 14600
Number of successful extensions: 27
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95920632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)