Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_C04
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.6  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    27   4.6  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.6  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    26   8.1  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 282  ISSPSQSGTVLVFSETLSTKILH*TPKQNNHS-LENTFYVNTYTCITNGELSF 127
            I  P+ SG   +  E ++ K  H   + NNH   +   Y+ TY    NG LSF
Sbjct: 899  IQGPTSSGKTSMI-EYVAKKTGHKFVRINNHEHTDLQEYIGTYVTDDNGSLSF 950


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +3

Query: 240 PRIQGLFHSVTEKRSQNNDCGENS 311
           P I     SVT KRSQN   G NS
Sbjct: 76  PLISSKQFSVTSKRSQNGSSGSNS 99


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +2

Query: 626 TGSALSSTSKARQRSDVTVQELQTRL--HRTTDSNHKSQTRRRMQV*YDDVSHH 781
           + S+ SS+SK+   S  +     +R   HRTT  +HKS + R     Y  +SH+
Sbjct: 151 SSSSSSSSSKSSSSSSKSSSRSSSRTTSHRTT--SHKSSSYRPTVFPYTTISHY 202


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/73 (21%), Positives = 31/73 (42%)
 Frame = -3

Query: 427 VTNAGGPTMGRVLSSISTFSPLDESEPSSSIFFSVTIVTLFSPQSLF*DLFSVTEWNSPC 248
           ++++  P     L+  S F PLD+S    +  + V  +    P   F  L     +  P 
Sbjct: 35  LSSSKSPEYAFSLTQQSPFGPLDQSSSRRTFMYIVATLNASYPDHDFSSLQPTDFYKEPS 94

Query: 247 ILGNIVNENTSLN 209
           +   + + N++LN
Sbjct: 95  LSRVVDSVNSTLN 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,644
Number of Sequences: 5004
Number of extensions: 62531
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)