Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_C04
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0521 - 11156594-11156956,11157097-11157483,11158327-111583... 60 2e-09
05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118 56 5e-08
01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251 55 6e-08
02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688 54 2e-07
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509... 53 3e-07
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124... 42 5e-04
06_02_0097 + 11710560-11710859,11712605-11713270 40 0.003
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242 39 0.006
01_01_0147 - 1332752-1333447,1333557-1333739 36 0.042
01_06_0794 + 32050413-32050523,32050663-32051391 36 0.056
01_01_0145 + 1327172-1327362,1327491-1328169 33 0.30
03_02_0312 - 7326092-7326148,7326415-7326540,7327744-7327821,732... 31 0.91
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 29 4.9
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510... 29 6.4
05_01_0380 + 2978256-2979284 28 8.5
05_01_0379 + 2975701-2976831 28 8.5
>02_02_0521 -
11156594-11156956,11157097-11157483,11158327-11158383,
11159671-11159970
Length = 368
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = +3
Query: 639 CLALQRLVNDLMLPCRNYRRGCTELLTAITRVKHEEECKFDTMMCPITANCCSV----PF 806
CLAL+++ L LPC+ Y GC E+ +++KHE +C F CP + CSV PF
Sbjct: 150 CLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHESQCNFRPYNCPYAGSECSVVGDIPF 209
Query: 807 EELSSHLQXTHNI 845
L +HL+ H +
Sbjct: 210 --LVAHLRDDHKV 220
>05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118
Length = 361
Score = 55.6 bits (128), Expect = 5e-08
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Frame = +3
Query: 639 CLALQRLVNDLMLPCRNYRRGCTELLTAITRVKHEEECKFDTMMCPITANCCSV----PF 806
CLAL+++ L LPC+ GC E+ +++KHE +C F CP + C+V PF
Sbjct: 144 CLALEKVAESLELPCKYCSLGCPEIFPYYSKIKHEAQCSFRPYNCPYAGSECAVAGDIPF 203
Query: 807 EELSSHLQXTHNI 845
L +HL+ H +
Sbjct: 204 --LVAHLRDDHKV 214
>01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251
Length = 347
Score = 55.2 bits (127), Expect = 6e-08
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 639 CLALQRLVNDLMLPCRNYRRGCTELLTAITRVKHEEECKFDTMMCPITANCCSV--PFEE 812
CLAL+++ L LPC+ GC E+ +++KHE +C F CP + C+V
Sbjct: 130 CLALEKVAESLELPCKYCSLGCPEIFPYYSKIKHEAQCMFRPYNCPYAGSECAVVGDIPY 189
Query: 813 LSSHLQXTHNI 845
L +HL+ H +
Sbjct: 190 LVAHLRDDHKV 200
>02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688
Length = 308
Score = 53.6 bits (123), Expect = 2e-07
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 639 CLALQRLVNDLMLPCRNYRRGCTELLTAITRVKHEEECKFDTMMCPITANCCSVPFE--E 812
CLAL+++ L LPC+ GC E+ ++KHEE C+F CP + C + +
Sbjct: 104 CLALEKVAESLQLPCKYQSLGCAEIHPYQNKLKHEELCRFRPYSCPYAGSECLIAGDVPM 163
Query: 813 LSSHLQXTHNI 845
L SHL H +
Sbjct: 164 LVSHLINDHKV 174
>07_03_1564 +
27749899-27750166,27750431-27750507,27750923-27750950,
27751117-27751261,27751351-27751429,27751515-27751633,
27751732-27752073,27754807-27754896,27755730-27755955,
27756398-27756784,27757176-27757496
Length = 693
Score = 52.8 bits (121), Expect = 3e-07
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 639 CLALQRLVNDLMLPCRNYRRGCTELLTAITRVKHEEECKFDTMMCPITANCCSV--PFEE 812
CLAL+++ L LPC+ GC + ++KHE +C++ CP + C+V +
Sbjct: 489 CLALEKVAASLELPCKYQNFGCLGIYPYYCKLKHESQCQYRPYTCPYAGSECTVAGDIQY 548
Query: 813 LSSHLQXTHNI 845
L SHL+ H +
Sbjct: 549 LVSHLKDDHKV 559
>01_01_0136 +
1237623-1237820,1238313-1239001,1239978-1240308,
1240614-1241351
Length = 651
Score = 42.3 bits (95), Expect = 5e-04
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +3
Query: 621 RAPAAP---CLALQRLVNDLMLPCRNYRRGCTELLTAITRVKHEEECKFDTMMCPITANC 791
RAP A C A++ + L +PC +GC ++ R HE C CPI C
Sbjct: 90 RAPEATTTRCRAMEHFLAALAVPCSFNHKGCAAMVPYGEREAHEAACAHSPCYCPI-RGC 148
Query: 792 CSVPFEELS--SHLQXTH 839
S P+ +S HL+ H
Sbjct: 149 SSSPYSGVSLVEHLERKH 166
>06_02_0097 + 11710560-11710859,11712605-11713270
Length = 321
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 642 LALQRLVNDLMLPCRNYRRGCTELLTAITRVKHEEECKFDTMMCPITANCCSVPFE-ELS 818
+AL+++V + C + GC + + R HEE C F +CPI +NC F S
Sbjct: 132 IALEKIVESIKSSCSYAKWGCCKFINYAQRDAHEEACLFAPSVCPI-SNCGYRGFTGRWS 190
Query: 819 SHLQXTHN 842
H +H+
Sbjct: 191 GHFLTSHS 198
>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
Length = 417
Score = 38.7 bits (86), Expect = 0.006
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 627 PAAPCLALQRLVNDLMLPCRNYRRGCTELLTAITRVKHEEECKFDTMMCP 776
P+ C+A++R+VN + + C GC + + +HE+ C CP
Sbjct: 82 PSVRCVAMERVVNSVEVACAYAEHGCPDKIAYANITEHEKTCPHAPCFCP 131
>01_01_0147 - 1332752-1333447,1333557-1333739
Length = 292
Score = 35.9 bits (79), Expect = 0.042
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Frame = +3
Query: 639 CLALQRLVNDLMLPCR----NYRR-----GCTELLTAITRVKHEEECKFDTMMCPITANC 791
C L++++ + PCR Y R GCTE++ R HE C +CP
Sbjct: 92 CRPLEKVLAAMSAPCRFSTSAYMRLIRASGCTEIVAYTERRNHEASCPHAPCVCPFDG-- 149
Query: 792 CSVPFEELSSHLQXTH 839
C+ L SH+Q H
Sbjct: 150 CNYQGHLLYSHIQDEH 165
>01_06_0794 + 32050413-32050523,32050663-32051391
Length = 279
Score = 35.5 bits (78), Expect = 0.056
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 639 CLALQRLVNDLMLPCRNYRRGCTELLTAITRVKHEEECKFDTMMCP 776
C A+++++ +++PCRN GC HE+ C CP
Sbjct: 70 CFAVEQILRSILVPCRNAGYGCDAKTAYHDSDSHEDGCPHAPCFCP 115
>01_01_0145 + 1327172-1327362,1327491-1328169
Length = 289
Score = 33.1 bits (72), Expect = 0.30
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +3
Query: 639 CLALQRLVNDLMLPCRNYRRGCTELLTAITRVKHEEECKFDTMMCPITANCCSVPFEELS 818
C L++++ + PC+ GC E + R+ HE C CP C+ L
Sbjct: 96 CRPLEKVLAAMSAPCKFRASGCMETVGFTERLSHEASCTHAPCGCPFDG--CTYLGLLLY 153
Query: 819 SHLQXTHNIIAV 854
+H+ H AV
Sbjct: 154 NHILDEHATDAV 165
>03_02_0312 -
7326092-7326148,7326415-7326540,7327744-7327821,
7327916-7328178,7328699-7328741,7329581-7329632,
7329705-7329871,7330135-7330194,7330291-7330374,
7330654-7330758,7330840-7330899,7330976-7331032
Length = 383
Score = 31.5 bits (68), Expect = 0.91
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 239 SENTRTVPLCDGEEISEQ*LWREQRHDSNRKEN*RRRLR-FVQWRECRN 382
S N+R V L D E+ L R++R SNR+ R RLR +W E N
Sbjct: 283 SSNSRDVVLSDPAIQDERELKRQKRKQSNRESARRSRLRKQAEWEEVAN 331
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 411 PPALVTSEEGHAAQCTCPNCDELLSRFSECSIC 509
PP + ++ Q C +CD+LL C IC
Sbjct: 350 PPKIAKKKKQAGEQLLCRHCDKLLQSKQYCGIC 382
>04_04_1696 +
35448667-35449641,35449726-35450562,35450667-35451001,
35451371-35451497,35451594-35451752,35451872-35453053,
35453164-35453424,35453513-35453761
Length = 1374
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 393 TLPIVGPPALVTSEEGHAAQCTCPNCDELLSRFS 494
T+P P T +EG A C P + LLS S
Sbjct: 415 TVPFTNKPDSYTQDEGTAIHCEAPPSENLLSSVS 448
>05_01_0380 + 2978256-2979284
Length = 342
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Frame = +3
Query: 639 CLALQRLVNDLMLPCRNYRRGCTELLTAITRVKHEEECKFDTMMCPITANCCSV-PFEEL 815
C AL+RLV+ + + C + GC H C CP C V L
Sbjct: 124 CYALERLVDAIRVACPHAAHGCGATPAYHALDAHRRACPHAPCHCP-GERCGFVGSTVAL 182
Query: 816 SSHLQXTHN 842
H+ TH+
Sbjct: 183 QDHIAATHS 191
>05_01_0379 + 2975701-2976831
Length = 376
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Frame = +3
Query: 639 CLALQRLVNDLMLPCRNYRRGCTELLTAITRVKHEEECKFDTMMCPITANCCSV-PFEEL 815
C AL+RLV+ + + C + GC H C CP C V L
Sbjct: 174 CYALERLVDAIRVACPHAAHGCAARPAYHDVEAHRLACPHGPCHCP-GERCGFVGSTAAL 232
Query: 816 SSHLQXTHN 842
H THN
Sbjct: 233 LDHFAATHN 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,905,072
Number of Sequences: 37544
Number of extensions: 392555
Number of successful extensions: 1081
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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